Gordonia sp. YC-JH1: CXX93_18725
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Entry
CXX93_18725 CDS
T05256
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
goc
Gordonia sp. YC-JH1
Pathway
goc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
goc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CXX93_18725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
goc03021
]
CXX93_18725
03400 DNA repair and recombination proteins [BR:
goc03400
]
CXX93_18725
Enzymes [BR:
goc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CXX93_18725
Transcription machinery [BR:
goc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CXX93_18725
DNA repair and recombination proteins [BR:
goc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CXX93_18725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AUH70520
LinkDB
All DBs
Position
complement(4036532..4040032)
Genome browser
AA seq
1166 aa
AA seq
DB search
MALDRQSTSTTAGIIPGAPHRASFAKIDEPLEVPGLLDLQLDSFEWLVGTPEWRAKAIAR
GEENPVGGLEEVLRELSPIEDFSSSMSLSFSDPHFDEVKASIDECKDKDMTYAAPLFVTA
EFINNNTGEIKSQTVFMGDFPIMTDKGSFIINGTERVVVSQLVRSPGVYFDSTIDKTTEK
TLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTILLKALGMTNEDIAERFGFSEI
MMSTLEKDATTNQDEALLEVYRKLRPGEPPTKESAESLLENLFFKEKRYDLARVGRYKIN
KKLGLTANPMVGESTLTTEDIIATVEYLVRLHEADPNITTMMTVPGGVEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDAEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVVDGVLTDEIEYMTADEEDRYLIGQANTNYDADGT
ITDERVLVRIKGAEVEFVPAKSVEYLDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSEAPLVGTGMELRAAVDAGDVIVTGKTGVVEEVSADFITVMADDGTRDSYRLR
KFERSNHGTCANQVPIVDEGQRVEAGQVLADGPCTDQGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIG
AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRTF
SRDEDDDLAPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPV
DIILNTHGVPRRMNIGQILETHLGWVSKAGWNIDTEKLEEEWAKRLPEAMHSAPPNTNTA
TPVFDGAKDDELAGLLGSTLPNRDGEVMVGPDGKATLFDGRSGEPFPYPVSVGYMYIIKL
HHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS
DDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSEGTAIEMSDTDDE
DLERAAANLGINLSRNESATVDDLAN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttggcactcgaccgccagtccacctcaaccacagcgggaatcatcccgggcgcgccgcac
cgcgcttccttcgccaagatcgacgagccgctcgaggttccgggtctgctggatctgcag
ctcgactcgttcgaatggcttgtgggtacgcccgagtggcgcgcaaaggcgattgcacgg
ggtgaggagaacccggtcggcggactcgaggaagtcctccgcgaactctcgccgatcgaa
gacttctcgtcctcgatgtcgctgtcgttctctgatccgcacttcgacgaggtcaaggcc
tcgatcgatgagtgcaaggacaaggacatgacctacgcggcgccgttgttcgtcaccgcg
gagttcatcaacaacaacaccggtgagatcaagtcgcagaccgtcttcatgggcgacttc
ccgatcatgaccgacaagggcagcttcatcatcaacggcaccgagcgtgtcgtggtgagc
cagctggtccgcagccccggcgtctacttcgactccacgatcgacaagaccaccgagaag
acgctgcactcggtgaaggtgatcccgggccgcggcgcctggttggagttcgacgtcgac
aagcgcgacaccgtgggtgtccgcatcgaccgcaagcgtcgtcagccggtcaccatcctg
ctcaaggcactcggcatgaccaacgaggacatcgccgaacgcttcggcttctccgagatc
atgatgtcgaccctggagaaggacgcgaccaccaatcaggacgaggccctgctcgaggtc
taccgcaagctgcgtccgggtgagcccccgaccaaggagtccgcggagagcctgctggaa
aacctgttcttcaaggagaagcgctacgacctcgctcgcgtcggccgctacaagatcaac
aagaagctcggcctcacggcgaacccgatggtcggcgagtccacgctgaccaccgaggac
atcatcgccacggtcgagtacctggtgcgcctgcacgaggccgaccccaacatcaccacc
atgatgaccgtcccgggcggcgtcgaggtgccggtcgaggtcgacgacatcgaccacttc
ggcaaccgccggctccgcaccgtgggtgagctgatccagaaccagatccgcgtgggcctg
tcgcgtatggagcgggtggtgcgtgagcgcatgaccacccaggacgccgaggcgatcacc
ccgcagacgctgatcaacatccgccccgtggtcgcggccatcaaggagttcttcggaacc
agccagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgt
cgtctctcggcgctgggtccgggcggtctgtcgcgtgagcgcgccggcctcgaggtccgc
gacgtgcacccctcgcactacggccgcatgtgcccgatcgagacccccgagggtccgaac
atcggtctgatcggttcgctctcggtgtacgcgcgggtgaatccgttcggcttcatcgag
accccgtaccgcaaggtggtcgacggtgtgctgaccgacgagatcgagtacatgaccgcc
gatgaggaggatcgctacctgatcggtcaggccaacaccaactacgacgccgacggcacc
atcaccgacgagcgcgtcctggtccgcatcaagggcgccgaggtggagttcgttccggcc
aagtcggtcgagtacctcgacgtgtcgccgcgccagatggtgtcggtcgccaccgcgatg
atcccgttcctcgagcacgacgacgccaaccgtgcgctgatgggcgccaacatgcagcgc
caggcggtgccgctggtccgcagcgaggcgccgctggtcggcaccggcatggagctgcgt
gcggcggtcgacgccggcgacgtgatcgtcaccggcaagaccggtgtcgtggaggaggtc
tctgccgacttcatcacggtgatggccgacgacggaacgcgcgacagctaccggctgcgc
aagttcgagcgcagcaaccacggcacatgcgccaaccaggtgccgatcgtcgacgagggg
cagcgggtggaggccggtcaggtcctggccgacggcccctgcaccgaccagggcgagatg
gcgctgggcaagaacctgctcgtggcgatcatgccgtgggagggtcacaactacgaggac
gcgatcattctgtcgcagcgcctcgtggaagaggacgtgctcacctcgattcacatcgag
gagcacgagatcgacgcccgcgacaccaagctcggtgccgaggagatcacccgggacatc
ccgaacgtctccgacgaggtgctggccgatctcgacgagcgcggcatcgtccgcatcggt
gccgaggtccgcgacggcgacatcctggtcggcaaggtcacgccgaagggcgagaccgag
ctcaccccggaggagcgcctgctgcgcgcgatcttcggtgagaaggctcgcgaggtccgc
gacacctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggtgtccgcacgttc
agccgcgacgaggacgacgacctggcgcccggcgtcaacgagttggtccgcgtctacgtg
gcgcagaagcgcaagatccaggacggcgacaagctggccggccgccacggcaacaagggc
gtcatcggtaagatcctcccgcaggaggacatgccgttcctgcccgacggcaccccggtc
gacatcatcctgaacacccacggtgttccgcgtcgtatgaacatcggccagatcctcgag
acccacctcggctgggtgtcgaaggccggctggaacatcgacacggagaagctcgaggag
gagtgggccaagcgcctgcccgaggcgatgcactcggctccgccgaacacgaacaccgcg
accccggtgttcgacggtgcgaaggacgacgagctcgcgggtctgctcggttccaccctg
ccgaaccgcgacggtgaggtcatggtgggtccggacggcaaggcgacgctgttcgacggt
cgttccggcgagcccttcccgtacccggtctcggtcggctacatgtacatcatcaagctg
caccacctggtggacgacaagatccacgcgcgttccaccggtccgtactcgatgatcacc
cagcagccgctcggcggtaaggcccagttcggcggccagcgcttcggtgagatggagtgc
tgggcgatgcaggcctacggcgccgcctacaccctgcaggagctgctgaccatcaagtcg
gacgacgtcgtcggccgcgtgaaggtgtacgaggccatcgtcaagggcgagaacatcccc
gagccgggcatcccggagtcgttcaaggtgctcctgaaggagctccagtcgctgtgcctc
aacgtggaggtcctctccagcgagggcaccgccatcgagatgagcgacaccgacgacgag
gacctcgagcgcgctgctgccaaccttggcatcaacctgtcgcgcaacgagtccgccacg
gtcgacgatctcgccaactga
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