Gordonia sp. 135: GKZ92_04525
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Entry
GKZ92_04525 CDS
T06305
Name
(GenBank) AAA family ATPase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
god
Gordonia sp. 135
Brite
KEGG Orthology (KO) [BR:
god00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
god03400
]
GKZ92_04525
Enzymes [BR:
god01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GKZ92_04525
DNA repair and recombination proteins [BR:
god03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GKZ92_04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QGP86986
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Position
980427..983669
Genome browser
AA seq
1080 aa
AA seq
DB search
MTAAQLADQAARDRITTDTDATLFVEAGAGSGKTHSLVGRICHLVLHDGIELDAIAAITF
TEKAAAELRERVRVELATHVTDRARAALEQIDTAAIGTLHAFAARIIGEHPLEAGVPPRI
AVVDAMGSQLSFERRWRRMRTRLFTDDAPPMLVDAMGIVMAAGASLDQMRTLADALDRNW
DRLTLDDNPQGIAPADIDRILWETDAIIDKLDDCLDPEDKLAVKLEELREWRILVAAERD
SFGWVPMVDLCPKLGNVGRGSAWRGGVTQCKEIKAAAKALREEICSDVVGTYVDGAVRVV
VRHLSEIVLDEARERQRSGQLEFHDLLVLARDVLGKPEVAAAAHQRYQRVLLDEFQDTDP
LQLTLAQRIVAGRDEAGRLFTVGDPKQSIYRFRRADIAAYMSARDGTPPADVVQLTTNFR
STRPVLDWVNAVFGRLIVAEHHVQPEYTPLDPAPGRPRWDLSWGPKPFVFPDTEEPVHDE
DALSPAEALRARESRDVARIIATAIENGWRKETFDGDAYQHVPLRWKDICILIPSRAVLP
FLEKSLDAAGIEFRSEAASLVYSTQEVHDLLVTCRALANTADEAALVAALRTPLFGCGDD
DLLRWKAADGRWSIYADAPTTELAESPVAAACAYLEALSSELGDLNPGALLSRLATDRRV
FEVSMDSPRHRDVWRRLRFVIDQARAWYAEDRGSLRDYIDWAATQADENARVAETVLPEI
GVDAVRIMTIHAAKGLQFPMVVVAGMSGGFRTQPEPLLWDEDEKLQACASKNVASKGYAA
AAKIEKAHAEAEKKRLLYVACTRAESHLAVSGYVGKNASWGAALAPALEGLPNDVPELVE
PVRRDDEAIAQHERQAWVDWSAETAAIETASTLRVSYSATRIVHGVDDAEIVVLQGYRDS
GRLTAPVAEQIPVGAASPDSGATLGTALHALLEQVALGTAVDDEFDEIARRAAALAGVVD
VDHFVALARSALQSAPVQRAAVREHWKEMQLAGSGPDGVTVVEGIADLVYRDDDGSLVIV
DYKTDVGVSADTLEAYWAQLAIYADLLRNATGEKVSRLELVFCRPGQATVVERGLRLAGR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagcacaactcgccgaccaggccgcgcgcgatcgcatcaccaccgacaccgac
gccaccctgttcgtcgaagccggcgcaggcagcggcaagacccattcgctggtcggccgc
atctgtcacctggtgctgcacgatggcatcgaactcgatgccatcgccgccatcaccttc
accgagaaagccgcagccgaactccgtgaacgcgtgcgtgtcgagctcgccacacacgtc
accgaccgtgcgcgagccgctctcgaacagatcgacaccgcagccatcggcacgctgcac
gcgttcgcggcccgcatcatcggcgagcatcccctcgaagccggtgtgccaccgcgcatc
gcggttgtcgacgccatgggctcccagctgtccttcgaacgccgctggcgccgcatgcgc
acccgactgttcaccgacgacgccccacccatgctggtcgacgccatgggcatcgtgatg
gccgccggcgcatcactcgaccagatgcgcacactcgccgatgcgctggaccgcaactgg
gatcgcctcaccctcgacgacaacccccagggcatcgcacccgccgacatcgaccgcatc
ctgtgggagaccgacgccatcatcgacaagctcgacgattgtctcgatccggaggacaaa
ctcgcggtcaaactcgaggaactccgcgaatggcggatactggttgccgcggaacgtgat
tccttcggatgggttccgatggtggacctgtgcccgaaactcggcaacgtgggtcggggg
tcggcgtggcgcggtggtgtaacgcagtgcaaagagatcaaagccgccgccaaggcgctg
cgcgaggagatctgctccgacgtggtcggcacctacgtcgacggcgcggtgcgcgtggtg
gtccgtcacctgtcggagatcgtcctcgacgaggcgcgcgagcggcagcgcagcggacag
ctcgagttccacgacctgctcgtcctggcccgcgacgtactcggaaagccggaggtcgcc
gcagccgcccatcagcgctaccagcgcgtcctcctcgacgagttccaggacaccgatccg
ctgcaactcacactggcacaacgcatcgtcgccggtcgagacgaagccggccggctcttc
accgtcggcgacccgaaacaatccatctaccgcttccggcgcgccgacatcgcggcctac
atgtccgcgcgggatggcaccccgcccgccgacgtcgtacagctgaccaccaacttccgg
tccacgcgacccgtcctcgactgggtcaacgccgtcttcggccggctcatcgtcgccgag
catcacgtgcagcccgagtacacgccgctcgacccggccccgggccgaccccgctgggac
ctctcctggggaccgaagccgttcgtcttccccgacaccgaggaacccgtccacgacgag
gacgcactctcgcccgccgaagccctccgcgcacgcgagtcgcgcgacgtcgcgaggatc
atcgccaccgccatcgagaacggctggcgcaaggagacattcgacggggatgcgtaccag
cacgtccctttgcgctggaaggacatctgcatcctcatcccgtcgcgcgcggtactgccg
ttcctggagaagagcctcgacgccgcgggcatcgagttccgttcggaggcagcgagtctg
gtgtactcgacgcaagaggtgcacgaccttctcgtcacctgccgcgcactggcgaacacc
gccgacgaggccgcactcgtcgccgccctgcgtaccccgctgttcggctgcggtgacgac
gacctgctccgctggaaggccgccgacggccgatggagcatctacgccgatgcgcccacc
acagagttggccgagtcgccggtggcggccgcatgtgcatacctggaggctctgtcttcg
gaactgggggacctgaacccgggcgcactgctgagccgcctggccaccgaccgtcgggtg
ttcgaggtgtctatggactccccccgtcaccgcgacgtctggcgacggctccgcttcgtc
atcgaccaggcccgcgcctggtacgccgaagatcgtgggtcgctgcgcgactacatcgac
tgggccgccacccaggccgacgagaacgcgcgtgtggccgagaccgtcctccccgagatc
ggtgtcgacgccgtgcgcatcatgaccatccacgccgccaagggtttgcagttcccgatg
gtcgtcgtcgccggtatgagcggcggattccgcacccagcccgaaccgctgctgtgggac
gaggacgagaagctgcaggcatgcgcgtcgaagaacgtggcgtcgaaagggtatgcggca
gcggcaaagatcgagaaagcgcatgccgaggcggagaagaagcgcctgttgtacgtcgcc
tgcacgcgcgccgagagtcacctcgcggtctccggatacgtcgggaagaacgcatcctgg
ggagccgcgctcgcacccgcgctggagggattgcccaacgacgttccggagctcgtcgaa
ccggtcaggcgcgacgacgaagcgatcgcccagcacgaacgacaggcctgggtcgactgg
tcggcagagaccgccgcgatcgagaccgcctcgacgctccgcgtctcctactcggcgacg
cggatcgtccatggcgtcgatgacgccgaaatagttgtgctgcaggggtaccgggattcc
ggacggctgacagcgccggtagccgaacagatcccggtcggcgccgcgagccccgacagc
ggcgcgacgctgggtaccgccctgcacgcgcttctcgaacaggtcgccttgggtaccgcg
gtcgacgatgagttcgacgagatcgcccggcgtgcggccgcactcgccggcgtcgtcgac
gtggatcatttcgtggcgctggcccggtcggcgttgcagtcggcacccgttcagcgggct
gccgtccgcgagcactggaaggaaatgcagctcgccggttccgggcccgacggtgtcacc
gtggtcgagggcatcgcggacctggtgtaccgcgacgacgacggttcgttggtcatcgtc
gactacaagaccgacgtcggggtttccgccgacaccctcgaggcctactgggcgcaactc
gcgatctacgccgatctgttgcgaaatgcgactggggagaaagtgtctcggctggagctg
gtgttctgtcggcccgggcaggcgaccgtcgtcgaacgaggtctgcgcctggcaggacgc
tga
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