Gordonia otitidis: LK459_19525
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Entry
LK459_19525 CDS
T07915
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
goi
Gordonia otitidis
Pathway
goi03030
DNA replication
goi03430
Mismatch repair
goi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
goi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK459_19525 (dnaE)
03430 Mismatch repair
LK459_19525 (dnaE)
03440 Homologous recombination
LK459_19525 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
goi03032
]
LK459_19525 (dnaE)
03400 DNA repair and recombination proteins [BR:
goi03400
]
LK459_19525 (dnaE)
Enzymes [BR:
goi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK459_19525 (dnaE)
DNA replication proteins [BR:
goi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LK459_19525 (dnaE)
DNA repair and recombination proteins [BR:
goi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LK459_19525 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
UEA58709
LinkDB
All DBs
Position
4257654..4261196
Genome browser
AA seq
1180 aa
AA seq
DB search
MAGSFVHLHNHTEYSMLDGAAKVSPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAIKNE
IKPIIGIEAYIAPESRFNTKRIQWGTRDQKDDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDAEVIAEHAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQEI
FGKENFYLELMEHGLEIERRVRDGLLDIGRRLGIKPIVTNDCHYVTKDHASSHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSADEMRAQWDSIVPGACDNTLEIGERVQSYADVFTHRDR
MPIFPVPEGESQQTWLRKEVAKGLSERRFPGTEVPEDYQRRANYELDVIIQMGFPAYFLV
VGDLIKHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDID
IDFDDRRRGEMVRYATERWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITK
ALPPPIMAKDIPVWGITNPEHERFGEATEVRTLIETDPDVKKIYDTALGLEGLIRNAGVH
ACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALEN
ITLNRGIDLDLDTLPLEDEKTYELLAKGDTLGVFQLDGAAMRELLKMMQPTGFEDIVAVL
ALYRPGPMGVNAHTDYAKRKNGLQDIKPIHPELEEPLKEILAETYGLIVYQEQIMQIAQK
VAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRNNGFSQGAITALWDTVLPFAGYAF
NKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDV
NESQHNFAAVGADIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFSDYLNKIDVTACNKK
VTESLVKAGAFDSLDHPRKGLFLIHVEAVESVIGTKKAEAIGQFDLFGDAGGADDTMAEV
FAVKVPDQEWDSKHKLALEREMLGLYVSGHPLSGVEHAIAAQTDTSITQLLEGNISDGAQ
ITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAFQTYGMDIVADNIVLVKAR
VNMRDDSMMISANDLAVPDLNAAGATKPVALTLAARACTPDRVQALKQVLTRHPGPADVH
VTLVSDERSTVLKLTEALRVTPSSALMGDLKALLGPSCLS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggccggttcgtttgtccacctgcacaaccacaccgagtactcgatgctcgacggtgcc
gccaaggtgtcacctctgttcgcggaggccaagcggctggggatgaccgcgatcggtatg
accgaccacggcaacatgttcggtgccagcgagttctacaacactgcgatcaagaacgag
atcaagccgatcatcggcatcgaggcgtacatcgccccggagtcgcggttcaacaccaag
cgcatccagtggggtacccgcgaccagaaggacgacgacgtctcgggttcgggcgcgtac
acgcacatgacgatggtggcagagaacgccaccgggctgcgcaatctgttcaagctctcc
tcgctcgcatccatcgagggacagctgggcaagtgggcccgcatggatgccgaggtcatc
gccgaacacgcagaaggaatcatcgcgaccaccggctgcccgtcgggtgaggtgcagacc
cgcctgcggctcgggcacgagcgtgaggcgctcgaagccgcagccaagtggcaggagatc
ttcggcaaggagaatttctacctcgagttgatggagcacggtctcgagatcgagcgtcga
gtccgtgacggattgctcgacatcggccgtcgactcggcatcaagccgatcgtcaccaac
gactgccactacgtgaccaaagaccacgcctcgagccacgaggcgctgctgtgtgtgcag
accggaaagacgctctccgacccgacccgcttcaagttcgacggcgacggctactacctg
aagtcggccgacgagatgcgcgcccaatgggattcgatcgtccccggcgcctgtgacaac
actctggagatcggcgagcgggtgcagtcctacgccgatgtcttcacccatcgcgaccgg
atgccgatctttcccgtcccggagggagaatcgcagcagacgtggctccgtaaggaggtc
gccaagggcttgtccgagcggcgtttccccggcaccgaggtgcccgaggactaccagcga
cgggccaactacgaactcgacgtcatcatccagatgggtttccccgcgtacttcctcgtg
gtcggcgacctcatcaagcacgcacacgaggtggggatccgcgtcggacccggtcgtggt
tcggccgcaggctcgttggtggcgtgggcgctcgggatcaccaacatcgacccgatcccg
cacggactcctgttcgagcgattcctcaaccccgagcgtgtgtcgatgcccgatatcgac
atcgacttcgacgaccgccgtcgcggtgagatggtgcgctacgccacggaacgatggggg
agcgacaaggtcgcccaggtgatcaccttcggcaccatcaagacgaaggccgccatcaag
gactccgcgcgagtccagttcgggcagccggggttcgccatcgccgaccggatcaccaag
gcgctgcccccgccgatcatggcgaaggacatccccgtctggggcatcaccaaccccgag
cacgaacggttcggcgaggccaccgaggtccgcacactgatcgagaccgaccccgacgtc
aagaagatctacgacaccgctctcgggctcgagggactgatccgcaatgcgggcgtgcat
gcctgcgcggtgatcatgtcgtcggagccgctgaccgacgccatcccggtgtggaagcgc
gcacaggacggcgcgatcatcaccggatgggattacccgtcgtgtgaggccatcggcctg
ttgaagatggacttcctcggtctgcgcaacctgaccgtcatcggcgacgcgctcgagaac
atcaccctcaaccgcggcatcgacctcgacctcgacaccctgcctctcgaagacgagaag
acctacgagctgctcgccaagggcgacactctcggcgtgttccagctcgacggcgcggcc
atgcgtgaactgctgaagatgatgcagcccaccggtttcgaggacatcgtcgcggtgctc
gcgctctaccgacccgggccgatgggtgtcaacgcgcacaccgactacgccaagcgcaag
aacggcctgcaggacatcaagccgatccaccccgaactcgaggaaccactcaaggagatc
ctcgccgagacctacggtctgatcgtctaccaagagcagatcatgcagatcgcgcagaag
gtcgccgggtactccctcggacaggcagatctgttgcgtcgcgcaatgggtaagaagaag
aaggagatcctcgacgaggcctacgacggtttcgccgaggggatgcgcaacaacgggttc
tcccaaggcgcgatcaccgcgttgtgggacacggtgctcccgttcgccggctacgcgttc
aacaagtcgcacgcggcgggctacggtctcgtctccttctggaccgcctacctcaaggcc
aactatccggccgagtacatggcaggtctgctcacctccgtcggcgacgacaaggacaag
gcggccatctacctcgccgactgccgcaaactcggcatcaccgtcctcccacccgacgtc
aacgagtcgcagcacaacttcgccgcggtcggcgccgacatccgcttcggtctcgccgca
atccgcaacgtcggttctggcgtggtgtcctcgatcctcgccgcgcgcgaggagaagggg
aagttcacgagcttctccgactacctgaacaagatcgacgtcacggcctgcaacaaaaag
gtcaccgaatctttggtcaaggcaggcgctttcgactcgctcgaccatccgcgcaaggga
ctgttcctgatccacgtcgaggcggtcgagtcggtcatcggcaccaagaaggccgaggcg
atcggtcagttcgacctcttcggcgacgccggcggagccgacgacacgatggccgaggtg
ttcgcggtcaaggtgcccgatcaggagtgggattccaagcacaaactcgcactcgaacga
gagatgctgggactctacgtctccgggcacccgctcagcggcgtcgagcacgcaatcgcg
gcccagaccgacacctcgatcacgcagctgctcgagggcaacatctccgacggtgcgcag
atcaccatcggcggcatcatctcgtcggtgacgcggagggtgaacaagaagggtgagccg
tgggcggcggtcacgctcgaggacatggtcggtggtgtcgaggtctacttcttcccccgg
gcgttccagacctacgggatggacatcgtcgccgacaacatcgtcctggtgaaggcacgg
gtcaacatgcgtgacgattcgatgatgatcagcgccaacgatctcgccgttcccgacctc
aacgctgccggcgcgacgaagccggtggcgctgaccctggcggcgcgggcgtgcacccct
gatcgtgttcaggctctcaaacaggtactgacccgacatccgggtccggcagacgtacac
gtgaccctggtcagcgacgaacgctcgacggtgctcaagttgaccgaggcgttgcgtgtg
acacctagttcggcactcatgggggacttgaaggcgctgctcggaccgagctgcctgagc
tga
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