Gordonia pseudamarae: GII33_09635
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Entry
GII33_09635 CDS
T07482
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gpd
Gordonia pseudamarae
Pathway
gpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII33_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpd03019
]
GII33_09635
03016 Transfer RNA biogenesis [BR:
gpd03016
]
GII33_09635
Enzymes [BR:
gpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GII33_09635
Messenger RNA biogenesis [BR:
gpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GII33_09635
Transfer RNA biogenesis [BR:
gpd03016
]
Prokaryotic type
tRNA degradation factors
GII33_09635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QHN26195
LinkDB
All DBs
Position
2188569..2190860
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AA seq
763 aa
AA seq
DB search
MTDVNTDVAEDFDDSITEATAVIDNGSFGTRTIRFETGRLALQAAGSVVAYLDDETMLLS
TTAASKQPKENFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPS
FVDGLRNEIQVVVTVLSLNPQDLYDVLAINAASASTQIAGLPFSGPVGGVRVALIPTDEN
KAGQWVAFPTVEQLEGAVFDMVVAGRIVSGEGADADVAIMMVEAEATENVIDIVAGGAQA
PTEAIVAEGLEAAKPFIAALCEAQKSLAAASAKETGEFPLFPPYETDAFDAVAAAATDKL
SQILTIAAKHEREDATDDLKVEILDQLAGRFEGREKEIGAAFRSLTKKLVRQRILTDHFR
IDGRGITDIRSLSAEVAVIPRAHGSALFERGETQIMGVTTLDMVKMAQQIDSLGPETSKR
YMHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVLPSVADFPYAIRQVSEALGSN
GSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDQVDGETRYVALTDILGAEDAFGDM
DFKVAGTKDFVTALQLDTKLDGIPSHVLAGALSQAKDARLTILDVMAEAIDEPDEMSRYA
PRITTIKIPVDKIGELIGPKGKTINGITEETGANISIEDDGTVFVGAADGPSAQAAIDRV
NAIANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGKGKRINKVEDVVNVG
SKLRVEIADIDERGKISLVPVDDDKVNEAKADAEKADAEKANA
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtgaacaccgacgtcgccgaagacttcgacgactcgatcaccgaagccacc
gccgtcatcgacaacggcagcttcggcacccgtaccatccggttcgaaaccggacgtctc
gccctgcaggccgccggttcggtggtcgcctacctcgacgacgagacgatgctgctgtcc
accaccgcggcctccaagcagccgaaggagaacttcgacttcttcccgctgaccgtcgac
gtcgaagagcgtatgtacgccgccggccgtatccccggctcgttcttccgccgcgagggc
cgtccctccaccgacgccatcctcacctgccggctcatcgaccggccgctgcgcccgtcg
ttcgtcgacggcctgcgcaacgagatccaggtcgttgtcaccgtcctgagcctgaacccg
caggacctgtacgacgtgctcgccatcaacgcggcatcggcatcgacccagatcgccgga
ctgccgttctcgggccccgtcggcggtgtccgcgtcgccctcatcccgaccgacgagaac
aaggccggccagtgggtcgcgttcccgaccgtcgagcagcttgaaggcgccgttttcgac
atggtcgtcgccggccgcatcgtctccggtgagggcgccgacgccgacgtcgccatcatg
atggtcgaggccgaggccaccgagaacgtcatcgacatcgtcgccggtggtgcgcaggca
cccaccgaggccatcgtcgccgagggcctggaagcggccaagccgttcatcgccgccctg
tgcgaggcgcagaagtccctggctgcggcatcggcgaaggagaccggcgagttcccgctg
ttcccgccgtacgagaccgacgccttcgacgccgtcgccgccgcggccaccgacaagctg
tcgcagatcctcaccatcgccgccaagcacgagcgcgaggacgcgaccgacgacctgaag
gtcgagatcctcgaccagctcgccggccggttcgagggccgcgagaaggagatcggtgcg
gcgttccgctcgctcaccaagaagctggtgcgtcagcgcatcctcaccgaccacttccgc
atcgacggccgtggcatcaccgacatccggtcgctgtccgccgaggtcgcggtgatcccg
cgcgcccacggttcggcactgttcgagcgcggcgaaacccagatcatgggcgtcaccacc
ctcgacatggtgaagatggcccagcagatcgactcgctcggacccgaaacgtccaagcgg
tacatgcaccactacaacttcccgccgtactcgaccggtgagaccggtcgcgtcggatcg
cccaagcgtcgcgagatcggccacggcgcactcgccgagcgggccctggtgccggtgttg
ccgagcgtcgcggacttcccctacgcgatccgtcaggtgtccgaggcattgggctccaac
ggttccacctcgatgggttcggtgtgcgcctcgaccctgtcgctgctgaacgccggtgtg
ccgctgcgcgccccggtcgccggtatcgcgatgggtctggtctccgatcaggtcgacggc
gaaacccgttatgtcgcactgaccgacatcctcggcgccgaagacgcgttcggcgacatg
gacttcaaggttgccggcaccaaggatttcgtgaccgcgctgcagctggacaccaaactc
gacggcatcccgtcgcacgtgctcgccggtgcgctcagccaggccaaggacgcccggctg
accatcctcgacgtgatggccgaggccatcgacgagcccgacgagatgagccggtacgcg
ccgcggatcaccaccatcaagatccccgtcgacaagatcggtgagctgatcggccccaag
ggcaagacgatcaacggcatcaccgaggagaccggcgccaacatctccatcgaggacgac
ggcaccgtgtttgtcggcgccgccgacggcccgtcggcgcaggccgcgatcgaccgggtc
aacgccatcgccaacccgcagctgcccaaggtgggcgaacgcttcctgggcactgtggtc
aagaccaccgcgttcggcgcgttcgtgtcgctgctcccgggccgcgacggtctggtgcac
atctccaagctcggcaagggcaagcgcatcaacaaggtggaggacgtggtgaacgtcggc
tccaagttgcgcgtggagatcgccgacatcgacgagcgcggcaagatcagcctcgtgccg
gtggacgacgacaaggtcaacgaggccaaggccgacgcggagaaggccgacgcggagaag
gccaacgcctga
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