KEGG   Geomonas paludis: M1B72_00555
Entry
M1B72_00555       CDS       T08160                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
gpl  Geomonas paludis
Pathway
gpl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gpl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M1B72_00555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gpl03019]
    M1B72_00555
Messenger RNA biogenesis [BR:gpl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     M1B72_00555
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: UPU36225
UniProt: A0ABY4LF83
LinkDB
Position
136107..137783
AA seq 558 aa
MEESSIENTGLKFVALGGLGEIGLNMAAFEYGDDIVIVDCGLMFPEPYMLGIDVVIPDIG
YLMERADRIRAILLTHGHEDHIGALPYVLRDINPPIYGTALTLGFVKEKLKEFELDQKVD
LRVVKPRDVVELGDFIVEFIRVAHSTVDGCALALTCPEGVVIHTGDFKLDQTPVDGELTD
LPTFARYGQAGVLALFADSTNIEREGYTLSERVVGEAFDEIFPNCPGRVIVAAFSSNIHR
VQQVVHAAQKSGRKVLLNGRSMIANVQIARELGYLTIPDDLLMDLKELPRLPKEQVCMIT
TGSQGEPRSSLIRIAMDDHKQIKLERGDTVILSSRFIPGNEKTISDLMNHLYRRGAEVIH
EKVSEVHVSGHASQEELKLLHNLVKPRFFVPVHGEYRHLVKHAQLAQKVGTPEERCILAV
NGDVVLFSGDEALIVDQVNTGRVFVDGKGVGDVGNVVLKDRKHLSEDGMVVVIVGINQVS
GEIIYGPDIVTRGFIFEDESQQYLDEAKKVVLDTLALVSTEAMTDWNEVKLEVRRVLRRF
FNKTIERRPVILPLVLEM
NT seq 1677 nt   +upstreamnt  +downstreamnt
ttggaagaaagcagcattgaaaataccgggctgaagttcgtggccctgggcgggctgggc
gagatcggcctcaacatggcggccttcgagtacggcgacgacatcgtcatcgtcgactgc
ggcctgatgttcccggaaccgtacatgctgggcatcgacgtggtgatcccggacatcggc
tacctcatggaacgtgccgaccggatccgcgccatcctgctcacccacgggcacgaggac
cacatcggcgcgctcccctacgtgctgcgcgacatcaatccccccatctacggcaccgcc
ctcaccctgggcttcgtcaaggaaaagctgaaggagttcgaactcgaccagaaggtcgac
ctgcgcgtggtgaagccccgggacgtggtggaactgggcgacttcatcgtcgaattcatc
cgcgtggcccactccaccgtggacggctgcgccctggcactcacctgccccgagggcgtg
gtgatccacaccggcgacttcaagctcgaccagaccccggtggacggcgaactcaccgac
ctccccaccttcgcccgctacggccaggcgggggtgctggcgctcttcgccgactccacc
aacatcgagcgcgaagggtacaccctttccgaacgggtggtgggcgaggcgttcgacgag
atcttcccgaactgtcccggcagggtcatcgtcgcagctttctccagcaacatccatcgc
gtccagcaggtggtgcatgcggcgcagaagagcggcaggaaggtgcttctgaacggccgc
tccatgatcgccaacgtgcagatcgcccgcgagctcggctacctcaccatccccgacgac
ctcctcatggatctgaaggagctccccaggctccccaaggagcaggtctgcatgatcacc
accggcagccagggtgagccgaggagctcgctgatccggatcgcgatggacgaccacaag
cagatcaagctcgagcgcggcgataccgtcatcctctcgtcgcggttcatcccgggcaac
gagaagaccatctccgacctgatgaaccacctgtaccggcgcggcgccgaggtgatccac
gagaaggtctccgaggtgcacgtctccggtcacgccagccaggaggagctgaagcttttg
cacaacctggtcaagccccgcttcttcgtcccggtgcacggcgagtaccgtcacctggtg
aagcacgcccaactggcccagaaggtcggcactccggaggagcgctgcatcctggcggtg
aacggcgacgtggtgctcttctccggcgacgaggcgctcatcgtggaccaggtcaacacc
ggccgcgtcttcgtggacggcaagggggtcggcgacgtcggcaacgtggtcctgaaggac
cggaagcacctgtccgaggacggcatggtagtggtcatcgtcggcatcaaccaggtgagc
ggcgagatcatctacggccccgacatcgtgacgcgcgggttcatcttcgaggacgagagc
cagcagtacctggacgaggcgaagaaggtggtgctggacacgctggccctggtcagcacc
gaggccatgaccgactggaacgaggtgaagctggaggtgcgccgggtgctgcgccgcttc
ttcaacaagaccatcgaacgccggccggtgatattgccactggttttggaaatgtag

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