Geomonas paludis: M1B72_04370
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Entry
M1B72_04370 CDS
T08160
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gpl
Geomonas paludis
Pathway
gpl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gpl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M1B72_04370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpl03021
]
M1B72_04370 (rpoB)
03400 DNA repair and recombination proteins [BR:
gpl03400
]
M1B72_04370 (rpoB)
Enzymes [BR:
gpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M1B72_04370 (rpoB)
Transcription machinery [BR:
gpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M1B72_04370 (rpoB)
DNA repair and recombination proteins [BR:
gpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M1B72_04370 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UPU36949
UniProt:
A0A6V8N146
LinkDB
All DBs
Position
1022577..1026692
Genome browser
AA seq
1371 aa
AA seq
DB search
MAYSIANNPLLRKNFAKIHKIIDIPNLIDIQKNSYKRFLQLDTPVDARKNSGLEAVFRSV
FPIRDFSDTASLEYVSYSLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVAKDPGTRSI
RDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA
RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSNDALINYFYKSEEVKVGD
NGAMTKLVDAELLSNQKATADIVDPGTAEVILKANRKFTKAALRKMAEHGIKEIPIAEEE
VVGKVASHDIYDPATGEIVVECNEEITQAKLEEMTHKGITSFQVLFIDNLHVTSSFRDTI
LIDKIGSTDEALIEIYRRLRPGDPPTLKSALVLFENLFFNAERYDLSAVGRLKLNYKLGV
DVPLDCMTLTREDILEVVRYLIELKNGKGNIDDIDHLGNRRVRAVGELLENQYRIGLVRM
ERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPY
RVVREGKVTDEVRFFSALEEEGHAIAQANAEVDETGRFVSDYISARKSGEFVLVGRDELE
LMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARD
SGVSSVARHNGVVESVDASRIVVKIDEDQYDATGTGVDIYNLIKFARSNQNTCINQRPVV
KVGDHVKAGDIIADGPSTDMGELALGQNVLIAFMPWGGYNYEDSILISERLVKDDRYTSI
HIEEFEAVARDTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVRPGDILVGKITPKG
ETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTEIIEKA
EEQRLRKDEQDEIRIIRDSAIGKLKKLLVGKTAAVKIEGSDGKVLIPKGAVITEEMLKSF
SMDRWDEISIADDDTIDEKVAQTLSTLNQQIDIIKYVFDDKVQKLRRGDDLPPGVIKMVK
VYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQ
ILEMHLGWGAKGLGWKIEEFLEKNTPHDEIKRFLKGVYDNPEMDRFLDTLEGEELLNVAR
RLKRGIPMSSPVFEGASEESIQSMLTHAGFSTTGQVTLYDGKSGDKFMHQVTVGIMYFLK
LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVK
SDDVAGRTRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLETEED
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcaatcgcgaataaccccctgttgcgcaagaacttcgccaagatccacaag
atcatcgacataccgaacctcatcgacatccagaaaaattcctacaagagattcctccag
ctcgacactcccgtagacgcacgcaagaactccggcctggaagccgtgttccgcagcgtg
ttcccgatcagggacttcagcgacaccgcctcgcttgagtacgtttcgtattcgctgggc
gcgccgaagtacgacgtggaggagtgccaccagagggggatgacctttgccgcaccgatg
aaggtgaaggtaaggctggttgtgtgggacgtggcgaaggatcccggtaccagatcgatc
cgcgacatcaaggagcaggaggtttatttcggcgaaatcccgctgatgaccgacaacggg
acctttatcataaacggcaccgagcgcgttatcgtgagccagctgcaccgctcgccgggc
gtgttctacgaccacgacaagggcaagacccactccagtggcaaggtgctctactcggcc
cgcgtgatcccgtaccgcggttcgtggcttgactttgaatttgaccataaagacatcctt
tatgttcgcatagacaggcgtcgcaagatgccggccaccgtgctgctcaaggcccttggc
tactccaacgatgcgctgatcaactacttctacaagtccgaggaagtgaaggtcggcgac
aacggcgccatgaccaagctggtggacgcggaactgctctccaaccagaaggcgaccgcg
gacatcgtggacccgggcaccgccgaggtgatcctcaaggcgaaccgcaagttcaccaag
gcagcgctcaggaagatggccgagcacggcatcaaggagatcccgattgccgaggaggaa
gtggtcggcaaggtcgcttcccacgacatctacgaccccgccaccggcgagatcgtggtc
gagtgcaacgaggagatcacccaggccaagctcgaggaaatgacccataaggggatcacc
tccttccaggtgctcttcatcgacaacctgcacgtgacctccagcttccgcgacaccatc
ctgatcgacaagatcggctccaccgacgaggcgctgatcgagatctaccgtcgtctgcgt
ccgggcgatccgccgaccctgaagagcgcgctggttctgttcgagaacctgttcttcaac
gcggagcgctacgacctttccgccgtcggccgcctgaagctcaactacaagctgggcgtg
gacgtgccgcttgactgcatgacgctcacccgcgaggacatcctcgaggtggtgcgttac
ctgatcgagctgaaaaacggcaagggcaacatcgacgacatcgaccacctgggcaaccgc
cgcgtgcgcgccgttggtgagctcctcgagaaccagtaccgcatcggcctggtcaggatg
gagcgcgccatcaaggagcgcatgagcctccaggaagtcgagaacctgatgccgcacgac
ctgatcaactccaagccggtttccgccgtggtcaaggagttcttcggttcttcgcagctg
tcgcagttcatggaccagaccaacccgctctccgaggttacccacaagcgccgtctctcg
gcccttggaccgggtggtcttacccgcgagcgcgcgggcttcgaggtccgcgacgtacac
ccgacccactacggccgcgtctgcccgatcgagaccccggagggtccgaacatcggtctg
atcgcgtcgctgtccacctacgcgcgcatcaacgagcacggcttcgtcgagacgccgtac
cgcgtggtccgcgaaggcaaggtgaccgacgaggtccgcttcttctccgcgctggaggag
gaagggcacgccatcgcccaggccaacgccgaggtggacgagaccggccgcttcgtctcc
gactacatctccgccaggaagtccggcgagttcgtcctggtcgggcgtgacgagctggaa
ctcatggacgtcgccccgatgcagctggtttccgtcgcggcctcgctgatcccgttcctc
gagaacgacgacgcgaaccgcgcgctcatgggctccaacatgcagcgccaggcggtgccg
ctcttgcgcgccgactccccgctggtcggtaccggcatggagcgcgtcgtggcacgcgac
tcgggtgtttcctcggtcgcccgccacaacggcgtggtcgagagcgtcgatgcttcccgc
atcgtcgtcaagatcgacgaggaccagtacgatgccaccggcaccggcgtcgacatctac
aacctgatcaagttcgcccgttccaaccagaacacctgcatcaaccagaggccggtggtg
aaggtgggcgaccatgtcaaggccggcgacatcatcgccgacggcccctccaccgacatg
ggcgagctggctctgggccagaacgtgctgatcgcgttcatgccgtggggcggctacaac
tacgaggactccatcctcatctcggagcgcctggtaaaagacgaccgctacacctcgatc
cacatcgaggagttcgaggccgtggcccgcgacaccaagctcggcaaggaagagatcacc
tccgacatcccgaacctcggcgaggagaccctcaaggacctcgacgagtcgggcatcatc
aggatcggcgccgaggttcgtccgggcgacatcctggtcggtaagatcaccccgaaaggc
gagacccagctctctccggaagagaagctcctcagggccatcttcggcgagaaggccggc
gacgtgcgcgacacctcgctgcgcgttccgcctggggtcgagggtaccgtcatcggcgcc
aagatcttctccaggaagggtgccgacaaggacgcccgtaccgagatcatcgagaaggcc
gaagagcagcgcctgcgcaaggacgagcaggacgagatccgcatcatccgcgactcggcc
atcggcaagctgaaaaaactcctggtgggcaagaccgccgccgtgaagatagagggtagc
gacggcaaggtgctgatccccaaaggggcagtcatcaccgaggagatgctgaagtcgttc
tccatggaccgctgggacgagatctccatcgccgatgacgacaccatcgacgagaaagtg
gcccagaccctgtccacgctgaaccagcagatcgacatcatcaagtacgtcttcgacgac
aaggtgcagaaactgcgtcgcggcgacgacctgccgccgggcgtcatcaagatggtcaag
gtctacatcgccatcaagcgtaagctccaggtgggcgacaagatggcgggccgtcacggc
aacaagggtgtcgtttccaggatccttccggaagaggacatgccgtacatggaagacggt
cgtccggtcgagatcgtgctgaacccgctgggcgtaccttcccgtatgaacgtggggcag
atcctcgagatgcacctcggctggggcgccaaaggccttggttggaagatcgaggagttc
ctcgagaagaacaccccgcacgacgagatcaagaggttcctgaagggcgtctacgacaac
ccggaaatggaccgcttcctcgacaccctggaaggggaggagcttctcaacgtggcgcgg
cgcctcaagcgcggcatcccgatgtcgtcgccggtattcgagggggcgagcgaggagtcg
atccagtcgatgctgacccacgcaggcttcagcaccaccggccaggtcaccctgtacgac
ggcaagagcggcgacaagttcatgcaccaggtcaccgtcggcatcatgtacttcctgaag
ctgcaccacctggtcgacgacaagatccacgccaggagcatcggtccctactccctggtc
acccagcagccgctgggcggcaaggcgcagttcggtggccagcgactcggggagatggag
gtctgggcgatggaggcctacggcgccgcgtacgcgctgcaggagttcctcaccgtcaag
tccgacgatgttgccggccgcaccaggatgtacgaggccatcgtcaaagggaagcacacc
ctggagccgggtctgcccgagtcgttcaacgtcctcatcaaggaactgcagtcccttggt
ctcgacgtggaactcttggagaccgaagaggactag
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integrated database retrieval system
