Gossypium raimondii: 105768435
Help
Entry
105768435 CDS
T04129
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105768435
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
105768435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
105768435
NCBI-ProteinID:
XP_012443805
UniProt:
A0A0D2SI73
LinkDB
All DBs
Position
5:55278919..55281177
Genome browser
AA seq
454 aa
AA seq
DB search
MEVTKLRVVFLCSFFTLIPKLWANIAEFDDFWKQREDEAWKIALTAYEPSPENVTSHLNY
HVNKVLEKPMSNQPLEFKDVITNSTRRSLRGKHRKYTGPCLAINPIDRCWRCKKNWAKNR
KRLAKCVLGFGHKTRGGNKGEYYLVTDNSDDDVVNPKPGTLRHAVIQKRPLWIIFAHDMN
IKLSQELMVQSHKTIDGRGANVHIAYGCGITLQFVHNVIIHNIHIHRVVRSSGGLIRDSE
DHYGFRTVGDGDGISIFGSSRIWLDHISMSECQDGLIDAIQGSTAITISNCHFTHHDHVI
LLGASDVYSKDQYMQVTLAFNHFGKELIQRMPRCRWGYFHVVNNDYTHWKLYAIGGSTHP
TIISQGNRFIAPDDPLTKEITHRNYAPESEWRNWIWRSEGDRFMNGAFFVTSGPPSPPHL
KLKKKDIIKAKPATFVGRLTKFSGTLKCKEGVKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaactaagctaagggttgttttcctctgttcttttttcaccttaattccaaag
ctatgggcaaatattgctgaatttgatgatttttggaagcaacgtgaagacgaagcctgg
aagattgctctaacagcttatgaaccgagcccagaaaatgttaccagtcacctgaactat
cacgttaacaaggttcttgaaaaacctatgtccaaccaacccttagaatttaaggatgtt
attactaatagcacgagaagatccttgaggggtaaacataggaagtacactggtccatgc
ctggccatcaatccaattgataggtgctggagatgcaagaagaactgggccaagaatcgc
aaaagactagctaagtgtgtccttggttttggccacaaaactcgtggagggaataaggga
gaatactatttggttaccgataattctgatgatgatgttgtaaaccctaaaccaggaact
ttacgtcacgctgtgattcaaaagagaccattatggataatttttgcccatgatatgaac
attaaattatcacaagagctaatggttcaaagccataagacaattgatggtcgtggagca
aatgttcatatagcatatggatgtggcattacacttcaatttgtgcacaatgtcataatt
cataacattcacattcatcgcgttgttagaagtagtggtggcctaattagggactctgaa
gatcattatggttttcgcacggtgggcgatggagatgggatttccatatttggatcatca
aggatttggcttgatcatatttccatgtctgagtgtcaagatgggctcatcgatgcaata
caaggttccactgccatcaccatctcaaattgccatttcacccatcatgatcatgtgatc
ttgttaggtgcaagtgatgtctattctaaagatcaatatatgcaagtcacacttgcattc
aaccattttggcaaggaattgatacaaagaatgcctagatgtcgatggggatactttcat
gtcgtcaacaacgactacactcattggaaattgtatgccattggtggtagcacgcatcct
accattattagccaaggcaacaggttcattgctccagatgaccccctaactaaagagata
acccataggaactatgcaccagagtcagaatggaggaattggatatggagatcagaagga
gatcggttcatgaatggagcattttttgtaacatctgggccaccctcacctccccatttg
aaattaaaaaagaaggatataattaaagctaagcctgcaacatttgttggaagactcact
aaattctctgggactcttaaatgtaaagaaggagttaagtgttag
DBGET
integrated database retrieval system
