Gossypium raimondii: 105788053
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Entry
105788053 CDS
T04129
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105788053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105788053
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105788053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_VPS8
Ge1_WD40
Cytochrom_D1
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
105788053
NCBI-ProteinID:
XP_012470191
UniProt:
A0A0D2PN46
LinkDB
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Position
7:45678717..45683794
Genome browser
AA seq
436 aa
AA seq
DB search
MEGNNLEKTLQEGNLFRQLNCLIVAHLRHHNLTQAARAVASATMTPLDVEAPPNKLLELV
AKGIAVEKDETLRGVLSSTLFDLGTALGYGLNPDPRVSSVDFSAVQDTKGSSKSFPKHET
RHLSEHKNIARCARFSPDGKFVATGSADTSIKLFEISKIKQMMLPDSKEGPVRPVIRTFY
DHVQPINDLDFHPQSTVLISGAKDNTIKFFDFSKATAKRAFRVIQDTHNVRSVSFHPSGD
FLLAGTDHSIAHLYDVNTFQCYLSANTPEIGVNGAINQVRYSSTGGMYVTASKDGAIRLW
DGVSASCVRAIADAHGTAEATSACFTKDQRFVLSCGKDSAVKLWEIGTGRLVKQYLGATR
MQFRCQAVFNDTEEFVLSIDEPSNEIVIWDALTADKVAKWPSNHIGAPRWIEHSPTEAAF
ISCGTDRSVRFWKENL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcaataatttggagaaaacactccaagaagggaaccttttcaggcaactcaat
tgccttatcgttgctcatcttcgccatcacaatctcacccaagctgcaagagcagtggct
tcagcaacaatgacgcctttagacgttgaagcccctcctaataagcttcttgagcttgtt
gccaagggtattgcagtggagaaagatgagacattacgaggggttctttcttctacatta
tttgatttagggactgctttgggttatggcttgaatccggatcctcgggtttcttctgtt
gatttcagtgctgtgcaagatacaaaaggctcatcaaagagctttccaaagcacgagaca
aggcatctttctgaacacaagaatattgctaggtgtgcaaggtttagtcctgatgggaag
tttgttgctactggaagtgccgacacatcaataaaactttttgaaatatcgaaaataaag
caaatgatgctgccagattcaaaagaaggtcctgtgcgacctgttataaggacattttac
gaccatgtgcagcccataaacgatttggattttcatcctcagagtaccgtgctcatatct
ggggcaaaagataacacaataaaattctttgatttttccaaagctactgcaaagagagcc
ttcagagttatccaggatactcacaacgtacggtctgtatctttccatccatctggtgat
ttccttctagcaggaactgatcattcaatagcacatttatacgatgttaataccttccaa
tgttatctatctgcaaatacccctgagattggtgttaatggagccataaaccaggtaaga
tattcttctactggcggcatgtatgttactgcttctaaagatggtgctattcggttgtgg
gatggagtaagtgccagttgtgtgcgagccattgctgatgctcatggaacagcagaggcc
actagtgcatgttttacaaaggatcaaaggtttgttctttcctgcggaaaggattcagca
gtgaagctttgggagattggcactggaagattggtaaagcaatatcttggagctactcgc
atgcaattccggtgccaggctgtttttaatgatactgaagagtttgtgctatccatagat
gaacctagcaatgagattgttatttgggatgctttaacggctgacaaagtggcaaagtgg
ccttccaaccatatcggtgcgcctcgttggatcgagcactcaccaactgaggccgccttc
atttcctgtgggaccgacagatctgtccggttctggaaggaaaatctctga
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