Gossypium raimondii: 105788291
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Entry
105788291 CDS
T04129
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
gra
Gossypium raimondii
Pathway
gra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105788291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105788291
Enzymes [BR:
gra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
105788291
DNA repair and recombination proteins [BR:
gra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
105788291
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
105788291
NCBI-ProteinID:
XP_012470554
UniProt:
A0A0D2QHL0
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Position
2:complement(25967673..25980928)
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AA seq
536 aa
AA seq
DB search
MNQALQLGFRTFINLSSFPVDPRKLGIGRLAPLRGKVMGSKRRSFSNSSSIAGQNIDKKL
REAIDNDNNTISDNPLLQDIKDDPSKIEAMTIQQLRTALRTAGIPPKGLKRELVSALQSY
LAKEIDGAGESSLLADKQDPSSNSDKRIYMMMETKSVEDQVQDANSFSKVSKVQQSRRTV
KQLQIKGKTVDVNAKMVATEQKKSACASGRMTSLTKKKASSDVDSKYVSAKNRDTLPVNL
SEPWTILAHKKPQKGWIAYNPRTMRRSLPTENTKFVKILSWNVNGLRALLKLEGFSAMEL
AKQENFDVLCLQETKLQEKDVESIKQSLIEGYENSFWACSNTRLGYSGTAIISRIKPLSV
RYGLGISDHDSEGRVVTAEFDSFYLLSVYVPNSGDGLRRLTYRITEWDPSLSNYIKELEK
SKAVILTGDFNCAHEEIDIYNPAGNRRSAGFTIEERQSFSTNFLSSGFVDTFRKQNPDVV
GYTYWGYRHGARKGNKGWRLDYFLVSDAIADDVHDSFILPDVIGSDHCPIGLVLKL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagcattgcaactaggttttagaactttcataaatctttcaagctttccggtg
gaccctaggaaattgggtattggaagattggctcccttaagaggcaaagtaatggggtct
aagagaagaagcttttcgaattcatcctctattgctggccaaaacattgataaaaaactc
agagaagcaatagacaacgacaacaacaccatttctgataaccctcttctccaggatatc
aaggatgatccaagcaaaatcgaggcaatgacgattcaacaactcagaacggcattgagg
actgctgggatccctcccaaaggtttgaaacgtgagcttgtatctgctttacagtcttat
ttggccaaggaaatagatggtgcaggtgaaagttctcttttagcagataaacaagatccc
tcctccaattctgataaaagaatatatatgatgatggagacaaaatcagtagaggaccaa
gttcaggatgctaacagtttttctaaggtttccaaggttcaacagagcaggagaactgta
aaacagttgcaaattaagggcaaaactgttgatgttaatgctaaaatggtcgccactgag
cagaagaaatctgcttgtgcttcaggtaggatgacttctttgacgaagaagaaagcatct
tcagatgttgatagcaaatacgttagtgccaaaaatagagatactcttcctgtaaatcta
agtgaaccatggactattttggcccataagaagcctcaaaaagggtggatagcatataat
cctagaaccatgagacgttcacttcctacagagaatacaaagtttgtcaagattctttct
tggaatgtcaatgggcttagagcattgctgaaactagagggattctctgctatggaactt
gccaaacaggaaaactttgatgtattgtgtttgcaagaaactaagcttcaggagaaagat
gttgagtcaatcaaacagtctcttatagaaggatacgagaacagcttttgggcttgcagc
aatacaagacttggttattctggaacagcaataatatctcggataaagccactttcagtc
agatatggcctaggcatatcagatcatgatagtgaaggacgggttgtgacagcagagttc
gattctttttatttattaagtgtctatgttcctaattctggtgatggcttgagaaggctg
acatataggattacagaatgggatccatctcttagtaattacataaaagaactggaaaag
tcaaaggcagttattttgacgggggattttaattgtgcacatgaagagatagacatttat
aatccggctggaaacagaaggagtgctgggtttacaattgaagaaaggcagtcttttagc
acaaatttcttatccagtggttttgttgacacctttagaaagcagaatccagatgttgtg
ggctatacttactggggttatcggcatggtgcacgcaaaggtaataaaggatggaggctt
gactacttccttgtctcagacgccatagctgatgatgttcatgattcattcattcttcct
gatgtcattggtagtgatcactgccctattggacttgtactcaagctctag
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