Gossypium raimondii: 105789225
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Entry
105789225 CDS
T04129
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
gra
Gossypium raimondii
Pathway
gra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
105789225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105789225
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
105789225
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
105789225
NCBI-ProteinID:
XP_012471962
UniProt:
A0A0D2N7E0
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Position
7:complement(43909561..43914604)
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AA seq
983 aa
AA seq
DB search
MRNRDKSKIQTQSSGTLARKSQEGVNKFLRRSSRLSSSGKKEQDGFSLENDLKTNDQEVV
HTMDVCNASTVEGCHRDAIENSQAKEQEVVHSMDVCNASTVEDCHKDAIENSQAKEQEVV
HSMDAHNASPGDDCHKDTLLDDSEEMNDSDWEDGPILKSDPVGRSPNERMKGLTIEFDEP
SGSTGGRKPVRRASAEDKELAELVHKVHLLCLLARGRLIDNACDDSLIQASLLSLLPTHL
LKISEVSNITANALTPLVTWFHDNFHVRNLARAERSFRTALATALETHEGTPEEIAALSV
ALFRALKFTARFVSILDVTSLKPKADTYEPSNQVAERVSGGIFSTSTLMVDNLKRASIAP
SPVQTSPCNEKDDHGISSRKSKGGCSTSNDAQSRDSTSVKESTDGKSTCQVQPDTSRQCV
PKNSQGLKRKGDLEFEMQLAMAISATSVETHENIHDSSDGNNSLEASIPMKRWKRIERVE
SASCFQGFSTALGSRKVGSPLFWAEVYCDGENLTGKWVHVDAVNAIIDGEQKVEDAAAAC
KTSLRYVVAFAGHGAKDVTRRYCMKWYKIAPKRVNSTWWDSILAPLRQLESGGTGGTIKV
SEHPGENSSLDHVILPEKSGQEASKEYGSKIEVESSVKDSFVATRNSLEDMELETRALTE
PLPTNQQAYKNHALYALERWLTKYQILHPKGPILGFCSGYPVYPRSCVQTLKTRERWLRE
GLQIKGTETPVKVLEQSTKLKKARVSKDVCDEIDSKETIELYGKWQLEPLLLPRAVNGIV
PKNERGQVDVWSEKCLPPGTVHIRLPRVFVVAKRLEIDYAPAMVGFEFRNGRAVPVYDGI
VVCTEFKDAILEAYAEEEERRAAEEKKRTEAQAISRWYQLLSSVITRQKLNSYYRDSSSS
QPSRNIQDKNIETKTPVQSSNDNKQPTAHRKANNQDTTHTTSLVALEVGHEHVFLTKNES
FDAENSIRTKRCECGFSIQVEEL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacagagacaagtctaaaatccaaacccaatcttctggaacacttgctaggaaa
tcacaggagggagtgaacaaatttctaagacgatccagtagactcagctcttcagggaag
aaggaacaagatggattttccctggaaaacgatctaaaaacaaatgatcaagaagttgta
catacaatggatgtgtgcaatgcttcaacggttgaaggttgtcatagagatgccatagaa
aattctcaagcaaaggaacaagaagttgtacattcaatggatgtgtgcaatgcttcaacg
gttgaagattgtcataaagatgccatagaaaattctcaagcaaaggaacaagaagttgta
cattcaatggatgcacacaatgcttcaccgggtgatgattgtcataaagatactcttctc
gatgatagtgaagaaatgaatgattcagattgggaagatggtccgattcttaaatcagat
cctgtaggccgttctccaaatgaacggatgaaggggttaactattgaatttgatgaacca
tcaggttcaactggaggacggaagcctgttcgtcgagcatctgctgaagacaaggaattg
gctgaacttgtccataaggttcacttgctttgtttacttgcgaggggcagattaatagac
aatgcctgtgatgattctcttattcaggcttcattactttctcttctacctacacactta
ttgaagatatcggaagtctcgaatatcactgcaaacgctttgactcctctcgttacttgg
ttccatgataactttcatgtgagaaacttagctcgtgcggaaagatcatttcgtactgct
ttggctacagctcttgaaactcatgagggaactccagaagagattgcagctttatcggtg
gcattatttagagctttgaagtttacagcacggtttgtgtccattttggatgttacctcc
ttaaaacccaaggctgatacatatgaaccttcaaaccaagtggcagaaagagtgagtgga
gggatattcagtacttcaacactaatggtggataacctaaaaagagcttctattgctcca
tctccagttcaaacatccccatgcaacgagaaagatgatcatggcataagttcacgcaaa
agtaaaggtggctgctcaacgagcaacgatgctcaatccagggactctacttctgttaaa
gaatcgactgatggaaaatcaacctgtcaggtgcaaccggatacatctcgacaatgtgtt
cctaaaaattctcaagggttgaagaggaaaggggatctcgagtttgagatgcagttggca
atggctatttctgctactagtgttgagactcatgaaaacattcacgactcatccgatggt
aataactcattagaagcatctattcctatgaaaagatggaaaaggatcgaaagagtagaa
tctgcttcttgtttccaaggattttctactgcacttgggtcaagaaaagtaggatcacca
ttgttttgggcagaagtgtactgtgatggggagaacttgaccgggaaatgggtgcatgtt
gatgctgtgaatgcgattatagatggagaacagaaagtagaagacgcagctgctgcatgc
aaaacatcgttgagatatgtagttgcttttgcaggtcatggtgctaaagatgtgacccgc
aggtattgcatgaagtggtacaaaatagcaccgaaacgagttaattcaacttggtgggat
tccatattagcacctttgaggcagttagagtcaggaggaacggggggtacgattaaagta
tctgaacatccaggtgaaaatagtagtttggaccatgttatcttacccgagaagtcgggt
caagaagcttccaaagagtatggtagtaagatcgaagttgaatcttctgtgaaggactct
tttgttgccaccaggaactctcttgaagatatggaactggaaactcgggcattaaccgag
ccccttcccactaatcagcaggcctataaaaaccatgcattgtatgcacttgaaaggtgg
cttacaaagtatcagattctacatccaaaaggtcctattctcggtttctgctccggttat
ccggtatatcctcgctcttgtgtgcaaactctcaagacacgagaaagatggttgcgcgaa
ggactgcagatcaaaggcaccgagactcccgtaaaggtattggaacaatctacaaaacta
aagaaagctcgagtttccaaagatgtttgtgatgaaattgattctaaagaaactattgaa
ctttacgggaagtggcagctcgagccacttcttctccctcgtgctgttaatggaattgtg
ccaaagaacgagcgtggacaagttgatgtatggtccgagaagtgccttccgccagggacc
gttcacataaggttgccaagggtatttgttgttgccaagaggctggaaattgattatgca
ccggctatggttggttttgagtttagaaatggtcgtgctgttcccgtctatgatggaatt
gtggtctgtacagagttcaaggatgcaatattagaggcctatgccgaagaagaagaaaga
agagcggccgaagagaagaaacgaaccgaagcacaagctatctcaagatggtatcaactt
ctctcatccgtcataaccagacaaaagttgaacagctattaccgagacagttcgtcatca
caaccatccagaaacatccaagataaaaatattgagaccaaaactccagttcaaagcagc
aacgacaataagcaacctacagcccatcggaaagcaaataaccaagataccacgcatacc
acttcattggtagcactagaggtaggccacgaacacgtctttttaaccaaaaacgaaagt
ttcgacgcagagaactcaattcgaacaaagcgatgcgagtgtggattttctatccaggtg
gaagaattatag
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