KEGG   Gossypium raimondii: 105789225
Entry
105789225         CDS       T04129                                 
Name
(RefSeq) DNA repair protein RAD4
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
gra  Gossypium raimondii
Pathway
gra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    105789225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gra03400]
    105789225
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      105789225
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 Transglut_core
Other DBs
NCBI-GeneID: 105789225
NCBI-ProteinID: XP_012471962
UniProt: A0A0D2N7E0
LinkDB
Position
7:complement(43909561..43914604)
AA seq 983 aa
MRNRDKSKIQTQSSGTLARKSQEGVNKFLRRSSRLSSSGKKEQDGFSLENDLKTNDQEVV
HTMDVCNASTVEGCHRDAIENSQAKEQEVVHSMDVCNASTVEDCHKDAIENSQAKEQEVV
HSMDAHNASPGDDCHKDTLLDDSEEMNDSDWEDGPILKSDPVGRSPNERMKGLTIEFDEP
SGSTGGRKPVRRASAEDKELAELVHKVHLLCLLARGRLIDNACDDSLIQASLLSLLPTHL
LKISEVSNITANALTPLVTWFHDNFHVRNLARAERSFRTALATALETHEGTPEEIAALSV
ALFRALKFTARFVSILDVTSLKPKADTYEPSNQVAERVSGGIFSTSTLMVDNLKRASIAP
SPVQTSPCNEKDDHGISSRKSKGGCSTSNDAQSRDSTSVKESTDGKSTCQVQPDTSRQCV
PKNSQGLKRKGDLEFEMQLAMAISATSVETHENIHDSSDGNNSLEASIPMKRWKRIERVE
SASCFQGFSTALGSRKVGSPLFWAEVYCDGENLTGKWVHVDAVNAIIDGEQKVEDAAAAC
KTSLRYVVAFAGHGAKDVTRRYCMKWYKIAPKRVNSTWWDSILAPLRQLESGGTGGTIKV
SEHPGENSSLDHVILPEKSGQEASKEYGSKIEVESSVKDSFVATRNSLEDMELETRALTE
PLPTNQQAYKNHALYALERWLTKYQILHPKGPILGFCSGYPVYPRSCVQTLKTRERWLRE
GLQIKGTETPVKVLEQSTKLKKARVSKDVCDEIDSKETIELYGKWQLEPLLLPRAVNGIV
PKNERGQVDVWSEKCLPPGTVHIRLPRVFVVAKRLEIDYAPAMVGFEFRNGRAVPVYDGI
VVCTEFKDAILEAYAEEEERRAAEEKKRTEAQAISRWYQLLSSVITRQKLNSYYRDSSSS
QPSRNIQDKNIETKTPVQSSNDNKQPTAHRKANNQDTTHTTSLVALEVGHEHVFLTKNES
FDAENSIRTKRCECGFSIQVEEL
NT seq 2952 nt   +upstreamnt  +downstreamnt
atgagaaacagagacaagtctaaaatccaaacccaatcttctggaacacttgctaggaaa
tcacaggagggagtgaacaaatttctaagacgatccagtagactcagctcttcagggaag
aaggaacaagatggattttccctggaaaacgatctaaaaacaaatgatcaagaagttgta
catacaatggatgtgtgcaatgcttcaacggttgaaggttgtcatagagatgccatagaa
aattctcaagcaaaggaacaagaagttgtacattcaatggatgtgtgcaatgcttcaacg
gttgaagattgtcataaagatgccatagaaaattctcaagcaaaggaacaagaagttgta
cattcaatggatgcacacaatgcttcaccgggtgatgattgtcataaagatactcttctc
gatgatagtgaagaaatgaatgattcagattgggaagatggtccgattcttaaatcagat
cctgtaggccgttctccaaatgaacggatgaaggggttaactattgaatttgatgaacca
tcaggttcaactggaggacggaagcctgttcgtcgagcatctgctgaagacaaggaattg
gctgaacttgtccataaggttcacttgctttgtttacttgcgaggggcagattaatagac
aatgcctgtgatgattctcttattcaggcttcattactttctcttctacctacacactta
ttgaagatatcggaagtctcgaatatcactgcaaacgctttgactcctctcgttacttgg
ttccatgataactttcatgtgagaaacttagctcgtgcggaaagatcatttcgtactgct
ttggctacagctcttgaaactcatgagggaactccagaagagattgcagctttatcggtg
gcattatttagagctttgaagtttacagcacggtttgtgtccattttggatgttacctcc
ttaaaacccaaggctgatacatatgaaccttcaaaccaagtggcagaaagagtgagtgga
gggatattcagtacttcaacactaatggtggataacctaaaaagagcttctattgctcca
tctccagttcaaacatccccatgcaacgagaaagatgatcatggcataagttcacgcaaa
agtaaaggtggctgctcaacgagcaacgatgctcaatccagggactctacttctgttaaa
gaatcgactgatggaaaatcaacctgtcaggtgcaaccggatacatctcgacaatgtgtt
cctaaaaattctcaagggttgaagaggaaaggggatctcgagtttgagatgcagttggca
atggctatttctgctactagtgttgagactcatgaaaacattcacgactcatccgatggt
aataactcattagaagcatctattcctatgaaaagatggaaaaggatcgaaagagtagaa
tctgcttcttgtttccaaggattttctactgcacttgggtcaagaaaagtaggatcacca
ttgttttgggcagaagtgtactgtgatggggagaacttgaccgggaaatgggtgcatgtt
gatgctgtgaatgcgattatagatggagaacagaaagtagaagacgcagctgctgcatgc
aaaacatcgttgagatatgtagttgcttttgcaggtcatggtgctaaagatgtgacccgc
aggtattgcatgaagtggtacaaaatagcaccgaaacgagttaattcaacttggtgggat
tccatattagcacctttgaggcagttagagtcaggaggaacggggggtacgattaaagta
tctgaacatccaggtgaaaatagtagtttggaccatgttatcttacccgagaagtcgggt
caagaagcttccaaagagtatggtagtaagatcgaagttgaatcttctgtgaaggactct
tttgttgccaccaggaactctcttgaagatatggaactggaaactcgggcattaaccgag
ccccttcccactaatcagcaggcctataaaaaccatgcattgtatgcacttgaaaggtgg
cttacaaagtatcagattctacatccaaaaggtcctattctcggtttctgctccggttat
ccggtatatcctcgctcttgtgtgcaaactctcaagacacgagaaagatggttgcgcgaa
ggactgcagatcaaaggcaccgagactcccgtaaaggtattggaacaatctacaaaacta
aagaaagctcgagtttccaaagatgtttgtgatgaaattgattctaaagaaactattgaa
ctttacgggaagtggcagctcgagccacttcttctccctcgtgctgttaatggaattgtg
ccaaagaacgagcgtggacaagttgatgtatggtccgagaagtgccttccgccagggacc
gttcacataaggttgccaagggtatttgttgttgccaagaggctggaaattgattatgca
ccggctatggttggttttgagtttagaaatggtcgtgctgttcccgtctatgatggaatt
gtggtctgtacagagttcaaggatgcaatattagaggcctatgccgaagaagaagaaaga
agagcggccgaagagaagaaacgaaccgaagcacaagctatctcaagatggtatcaactt
ctctcatccgtcataaccagacaaaagttgaacagctattaccgagacagttcgtcatca
caaccatccagaaacatccaagataaaaatattgagaccaaaactccagttcaaagcagc
aacgacaataagcaacctacagcccatcggaaagcaaataaccaagataccacgcatacc
acttcattggtagcactagaggtaggccacgaacacgtctttttaaccaaaaacgaaagt
ttcgacgcagagaactcaattcgaacaaagcgatgcgagtgtggattttctatccaggtg
gaagaattatag

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