Gossypium raimondii: 105795415
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Entry
105795415 CDS
T04129
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105795415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105795415
03009 Ribosome biogenesis [BR:
gra03009
]
105795415
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105795415
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
105795415
Pre-60S particles
105795415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT_GCN1
HEAT
TOR1L1_N
HEAT_2
HEAT_MROH2B_C
IBN_N
TPR_IMB1
CLASP_N
Htt_N-HEAT_1
Arm
PSME4_C
Nipped-B_C
Motif
Other DBs
NCBI-GeneID:
105795415
NCBI-ProteinID:
XP_012480482
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All DBs
Position
3:62178633..62187735
Genome browser
AA seq
888 aa
AA seq
DB search
MRRTITRLGPWQPHEEGLNQIILLLLLDNLPFSTVIRIQIRMQLLHFSLFDDFNNYLAFI
LSRAKDVPVEIRKVAGLLLKNGLMAVYNLMEPEHQQYIKLQLLYGLGEADQHIRSTCGTT
ISNVVQQGGISGWPELFHTLLHFLNSGDPNRNGGAMDALSKISENTPELLDSDDAWSGQR
PINKFLLELFEFFHSPHANLRKLSLRFVNKYIISMPSGLYTSKNKYLDGLFLLANEPDAA
VRKLVCTALLQLVEFHPSVLEPRLKDVIECMLQLNKDNNDVLALEACGFWSKYWDAQIPP
ENLREYLPHLTLILLSNMAYPNDDDLLADAEVIDAKEDESIPDRYQDLKPQLPCSDEDDD
TCTICNLRKCSASALDVLSNVFGAKILLTFMPIIEANLSATGDEAWRDKEAAVLALGVIA
RGCINGLYPRLSEIVASLIPLLDHKFTLIRSTSCWTLSQFSKYIVQDSGNKKGYEQFDMV
LTAFLQRISDTNKLVQGAACSALAILEEEAAEKLAPRLKEILQHLMHPLGEYQKRNLRII
CDAIGTLVDAVGEELDQPVYVEILIPPLIQKWQNFSIFDKDLLTLLECFTSIVQALRSIE
FSQFTEHLFSRCITIIEAQQQLAKAHPFSDKDFVTCSLDFLSGLTGCFHNGIESLVLQSN
LRDMLLKCCRDGAPDVRQSAFGLLGDLARVCPIHLHPRVPEFLYLVVKQLKIPKFEKTIS
VANNACWAIGELAVQVPKEISPFVATVISCLIPILHQSEGVVKSMVENSAITLGRLAFVC
PDLVSPHMEKCMQSWCISLSTTRDGIEKEDAFKGLCAMVKANPSVAQSSLVYVCKAIASW
TKIWSTELNTEVCKVMHDYQQMLTNEAWDKFMSDLDPLVKANIAKYLV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgagaaggacgataactcggcttgggccatggcagccacacgaagaggggttgaaccaa
ataattctcctgttgctgctggataatttgccgttttctacggttattaggattcagatt
cggatgcagcttctgcatttctctttgttcgatgatttcaacaactatcttgcttttatc
ctttcaagagctaaggatgtacctgtagagattcgaaaagttgctggtctgctgctgaaa
aatgggctaatggctgtatacaatttgatggagcctgaacaccaacaatatataaaatta
caactgttatatggtttaggagaagcagatcaacacattaggtcaacttgtgggacgact
atatcaaatgttgttcaacaagggggaatttcgggatggcctgaactgtttcatactctt
ctacatttccttaatagtggtgatccaaatagaaatggaggtgctatggatgcattgtca
aagatctctgagaatacacccgaattgttggattctgatgacgcttggtcaggtcaaagg
cccatcaacaaattccttcttgaattgtttgagttttttcattcgccacatgctaacttg
agaaagctttcattgcgttttgtaaacaaatacattatctctatgccttctgggctatac
acatccaaaaataaataccttgatggtttgtttctccttgccaatgagccagatgcagca
gtgaggaaattggtttgtactgcattgcttcagctagttgaattccatccatctgttcta
gagccccgtttgaaggatgtaattgaatgtatgttacaactcaataaggacaacaatgat
gtactggcacttgaagcatgtggattttggtctaaatattgggatgcacagataccacct
gagaatttgagagaatatttgccacatttaactctaattttgttgtcaaacatggcttac
cctaatgatgatgatttacttgctgatgcagaggttattgatgctaaggaagacgagtct
attccagacagatatcaggatctgaaacctcaacttccttgttctgatgaagatgatgac
acttgtaccatctgtaacttacggaaatgcagtgcctcagctcttgatgttctatcaaat
gtgtttggagctaaaattcttcttacattcatgcctattatcgaggcaaacttatctgct
actggtgatgaagcctggagggacaaggaagctgctgttctggctcttggtgtaatcgct
cgaggttgcatcaatggtctttatcctcgtttgtctgagatcgtggcatctctaattccc
cttttagatcataagtttactctcataaggagtacttcttgttggacactttctcaattc
agcaaatacattgttcaggatagtggtaataaaaaaggctatgagcaatttgacatggtt
cttacggctttcctgcaaagaatatcggatactaacaagctggtacaaggggctgcttgt
tctgctcttgcaatacttgaagaggaggctgccgaaaagttggcaccaaggttgaaagaa
atattacagcatcttatgcatcctttgggcgagtatcagaaacggaacctgagaattatt
tgtgatgctatcggaactctagtagatgctgtcggagaggaattggatcagcctgtttat
gttgaaattctgattccaccactcattcaaaagtggcaaaatttttcaatttttgacaaa
gatctcttaacacttcttgagtgcttcacatccatcgtgcaggcattgcgtagcatcgaa
ttctctcagtttactgagcatttattcagtaggtgcataactatcatcgaggctcaacaa
cagttggccaaggctcatcctttttcagataaggacttcgttacatgctcgcttgatttt
ctatctggactaacagggtgctttcataatggaatagagagtttggttttacaaagcaat
ttgagggacatgcttctgaaatgttgcagggatggtgctcctgatgttcgacaaagtgcc
tttggtcttctaggggacctagcaagagtttgtcctattcatttgcatcctcgtgtacct
gagttcctttatctagtggtgaagcaattgaagattcccaagttcgagaaaaccatttca
gtagcaaacaatgcatgttgggctatcggagagctagccgttcaggttcctaaagaaatt
tctccgtttgtcgcaacagtgatctcgtgtttgattccaatccttcatcaatcagagggg
gtggtgaagtcaatggttgaaaatagtgccattactctagggaggcttgcatttgtctgt
ccagatcttgtgtcgccacacatggagaagtgcatgcaatcgtggtgcatttctttatct
actacacgtgacggtatcgagaaagaagatgccttcaaaggtctttgtgcaatggtcaag
gcaaatccttcagttgctcagagttcgcttgtttacgtatgcaaagctattgcaagctgg
acaaaaatatggagcacagaactgaatacagaagtttgcaaggtcatgcatgattatcaa
cagatgcttactaacgaggcatgggacaaatttatgtccgatttggatccactcgtgaag
gctaatattgcgaagtatctagtttaa
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