Gossypium raimondii: 105802567
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Entry
105802567 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105802567 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105802567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105802567
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105802567
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105802567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
105802567
NCBI-ProteinID:
XP_012489727
LinkDB
All DBs
Position
11:complement(56826931..56845052)
Genome browser
AA seq
2414 aa
AA seq
DB search
MLNLSSTLSTHVRFLLQSLTEANADSVSRDLCQFIEYGIEGSILVLQTCLDCLNSHKTDS
KNLQSEQVVASIFRHAMDKPNFCTVFCQSLRSMDISENFLENFSKAMQFSMSEKIGIGLA
LSDSENPDIKICGKNFCMAQIEELNSNTASFDSTEQIQNVVMFLQCSGALSKHVDSFMQM
LSLVQANGAAQFILTPILSDESRGANFLRNMDFFNECGENDFDALLEEMEKEMSMADIIK
ELGYGCTVDVAHCKEILSLCLPLTEMTIARILGMIVLTYAGLEDNQTMFSTFSLALGCNT
SYDLPSLSSWNIDVLVKTIKQFAPGTNWIRVIENLDHEGFYIPSEAAFTFFMSVYQHACQ
DPFPLHAICGSVWKNSEGQLSFLKYAVSAVPDVFTFDHSSRKLAYLDAVYGHKLHLANEN
HAWLCLDLLDVLCQLAERGHTIFVRSMLDYPLKHCPEVLLLGMAHVNTAYNLLQHDVTST
VFPMIIKNALGAGMVLELWNVNANLVLRGFVEVHNSEPDGMIRILEVCQESKILSSVLEM
IPFPSGIRLAVLASRKEVIDFEKWLSGNLNTYKDVFLEECLKFLKEIQFAGSQEFSATPF
HHTTAVLNLYLEASSTIIKVLKANTGVIASTQLLEEMERLHVTIMDSTQKLQNGGTTESS
TSDGYGDDIEAEANSYFHQMFSEQLTTDAMVQMLARFKDSSVRREQLIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRCVLDALRKPADSKMFLFGTKALE
QFVDRLIEWPQYCNHILQISHLRATHSELVAFIERALVRISSGHLESDGSNNLSAHHQAS
SQVTPVNGELNSSGIAQPGPQLSSQLQLPRHDSSHDDRIKAPAASSNDVKPLVSSVGQPS
VAPLSDASSIQKVSQSVGSGSSMLSASPGFVRSSRGVTSTRFGSALNIETLVAAAERRET
PIEAPASEIQDKISFIINNISVANIEAKGKEFTEILKEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKALTKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILSLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDMKDISPTSLLKDRKRELEGNPDFSNKDVGVSQAPM
VAEVKSGIISPLNHVDLSLEGASPPNSGGPTHLLSQYAGPLRLSSGALMEDEKLAALGLS
DQLPSAQGLFQATPSQSPFSVSQLSTSIPNIGTHVIINQKLSSLGLHMHFQRVVPIAMDR
AIKEIVAGIIQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNSLQGLSVGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIA
TQLSLRRKHRDPTFFDPSMYGQGSVGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSG
QNSHSMSASPSSLSGDAGLTGTFGSTSGQGTPGYTSGPGTLGQLDVTSEAIETSSAALLS
ASSIHIGAGAALTQQTTENDPLNASFPSTTLAPELHSVDTTDAVKELGPTPQPLPSSAVT
ERLGSSISEASLSTRDALDKFQLVALKLESLVTTDGREADIQGLISEVPEIILRCVSRDE
AALAVAQKVFKGLYENASNSLHVNAYLAILAAVRDVCKLAVKELTSWVIYSDEERKFNKD
ITVGLIRSELLNLAEYNVLMAKLIDGGRNKAATEFAMSLLQTLVTDESRVISELHNLVDA
LAKVASKPGSSESLQHLIEMIGNPSASMAVLSSASIGKEDKTRQSRDKKAPGHTPASRED
NSNIEALEPDPAGFKEQVSMLFAEWYQICELPGANDGPCNHYIVQLHQNGLLKGDDTTER
FFRIIMELSVAHCLSSEVMNSGTLQSPQQVQTLSFLAIDIYAKLVVSILKFCPVEQGSSK
LFLMSKILTVTVRLIQKEAEDRKAAFNPRPYFRLFINWLLDLGSLDPVPDGANFQILTAF
ANAFHALHPLKVPAFSFAWLELVSHRSFMPKLLTWNGQKGWPYIQRLLVDLLQFLEPFLR
NAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDCHFTFCDVIPPSCIQMRNIILSAFPRNM
RLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKMRPQGGSTFLTELK
QRLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQSRVPHAQSAASTAPMSVFLVSA
ALDIFQTLIADLDTEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAEANQEIIQEQITR
VLLERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPV
DDSIVSGWVSDNAH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctttcatccacgctctcaactcacgttcggttcctgctccagtccttgacc
gaagccaacgccgactcagtttctcgagacctctgccagttcatcgaatatggtatagag
ggaagcattctggtgttgcagacctgcttagattgcttgaactctcacaagacagattca
aagaacttgcaatctgaacaagttgtagcatcaatttttagacatgcaatggacaagcca
aatttttgtactgtcttctgtcagtcactaagaagtatggatatcagtgagaattttttg
gagaatttctcaaaagcaatgcagttttccatgtctgagaaaattggcattggtcttgct
ttatctgattcagaaaatcctgatataaaaatctgtgggaagaatttctgtatggctcag
attgaggaattgaactcgaatactgcctcttttgattctactgagcaaattcagaatgta
gttatgttcctccagtgctctggtgctctttccaagcatgtagattcctttatgcagatg
ttatctctagttcaagctaacggtgctgcacagtttattttgactccaatactttcagat
gaatcacgtggggctaatttcttaaggaatatggatttcttcaatgaatgtggagaaaat
gattttgatgcacttttagaagaaatggagaaggaaatgagcatggcagatatcattaag
gaactaggctatggatgcactgttgatgttgcgcactgcaaagaaattttatctctttgc
ttacctctgacagagatgactatagctagaatacttggcatgattgtcctcacctatgca
gggcttgaggacaaccaaaccatgttttcaacatttagcctggcccttggttgcaacacc
tcatatgatttgccttcattgagctcctggaacattgatgttctcgtaaaaactataaag
caatttgctcctggtaccaactggattcgagttattgaaaacctggatcatgaggggttc
tacattcctagtgaagcagcattcacttttttcatgtctgtatatcaacatgcatgccag
gacccctttccactccatgccatttgtgggtccgtgtggaagaatagtgaaggtcagcta
tcttttctaaaatatgctgtatcagcagtgccagatgtatttacctttgaccattcttcg
aggaagctggcctatctggatgcagtgtacggccataagcttcaccttgcaaatgaaaat
catgcctggctgtgtcttgacctcttagatgtgctatgtcaactagctgaaaggggtcac
accatctttgttcgatcaatgcttgactaccccttaaaacactgccctgaagtcctgctt
cttgggatggcacatgttaatactgcttataatctcctccagcatgatgtcacttccaca
gttttcccaatgataattaaaaatgctctgggtgctggtatggtacttgaactatggaat
gtgaatgctaatcttgtcttgcggggatttgtagaagtacacaacagtgagccagacggc
atgattagaattttggaagtttgtcaagagtcaaagattctatcatcagtgctggagatg
ataccttttccttctggcattagattagcagtccttgcttccaggaaagaggtcatagac
tttgaaaagtggttgagtggtaacctgaatacatataaagatgttttcttggaggagtgc
ctaaagttcttgaaggagatacagtttgctggatcacaagagttttctgccacacctttc
catcatactactgctgttttgaatctttatttggaagctagttctaccattatcaaggtt
cttaaagctaatactggggtgatagcctctactcagcttctcgaggaaatggaaaggttg
catgtgacaataatggattctactcaaaagttgcaaaatggtgggaccacagagtcttca
acctctgatggatatggagatgatattgaggcagaagcaaactcttactttcatcaaatg
ttttctgaacagttgactactgatgcaatggttcaaatgcttgcccgattcaaggattct
tctgtgagaagggaacaactgatatttgagtgcatgattgcgaatctgtttgaagaatac
cgatttttccccaagtatccagaaagacagctcaaaattgctgcagttctctttggctct
gttatcaagcatcaacttgtaactcacctcactcttggaattgccttgcgttgtgttcta
gatgcattgcgtaaacctgcagattcaaaaatgtttttgtttggaaccaaggccttggag
cagtttgtggatcgtctgattgagtggccgcagtattgcaaccatattttacagatatct
cacctgcgtgccactcattcagagcttgttgctttcattgaacgagctcttgtcaggatt
tcatcaggtcacttggagtcagatgggagcaacaatctttctgctcatcaccaggcttcc
tctcaggtgaccccagtaaacggggagttaaatagctctggcatcgctcagccagggcca
caactttcttctcaacttcagcttccaagacatgatagttctcatgatgatcgtattaaa
gcccctgctgcatcttccaatgatgtgaaaccactggtgtcttctgtagggcagccttca
gttgctcccttgagtgatgcttctagtattcagaaagtatcgcaaagtgtaggcagtggt
tcttctatgctgtctgcttcccctggttttgttcgatcttctcggggcgttacttctacc
aggtttggctctgctttgaacattgaaacactagttgctgctgctgagagaagagagacg
cccatagaggctccggcatctgagattcaagacaagatatcattcataatcaataatatt
tcggttgcaaatattgaagctaaaggaaaagagttcactgaaatcctgaaagagcagtac
tatccttggtttgcccaatacatggttatgaaaagagcaagcattgagccaaattttcat
gatttgtatttgaagtttcttgacaaagttaactcaaaggctttgactaaggagatcgtc
caggctacatatgagaactgcaaggttttgctgggatctgagcttataaaatcaagctct
gaagagcggtcgttgctaaaaaatttgggtagttggcttgggaagttaacaattggccga
aatcaagtcctgagagctcgtgaaatagatcccaaatctctgattatagaggcgtatgag
aaggggctaatgattgcagttatcccatttacttcaaagattcttgagccgtgtcaaagc
agtctggcataccaaccccctaatccttggaccatgggcattctgtcattactagctgag
atttactcaatgccgaacttgaaaatgaatcttaagtttgacatagaggttctattcaag
aaccttggtgtggatatgaaggacatttcaccgacttctcttctcaaggatcgtaaaaga
gaactcgaggggaatcctgatttttctaataaagatgttggggtatcccaagccccaatg
gttgcagaagttaaatctggaataatttctccacttaatcatgtcgatttatctcttgag
ggtgctagtccaccaaattctggtggccccacacatttgttatctcagtatgctgggccc
ttgcgtctttcttctggtgcattgatggaggatgaaaaactagctgctttaggcttgtct
gatcagcttccttctgcacaaggactatttcaagccactccatcacagtcacctttttct
gttagtcagctgtccacgtcaattcctaacattggaactcatgttattatcaatcagaag
ctcagttctctaggcttgcacatgcacttccagagggtagttccaattgcaatggacaga
gctatcaaagagattgtagctggtattattcagcgcagtgtttctatagcaactcaaaca
accaaggagcttgttttaaaggattatgctatggaatcagacgagacacggatctataat
gctgcacacttgatggttgcaagtttggctggaagtctagcgcatgttacatgcaaggaa
cctttacgtggctctatatcaagtcagctgaggaattcacttcagggtttgagtgttggg
agtgatcttctagaacaagctgttcagcttgttactaatgataaccttgatcttggctgt
gcagtgattgaacaggctgctactgataaggcaatacaaacaattgatggagagatagct
actcaactttctttaagaagaaagcatagagatcccacattttttgatccaagcatgtat
ggacaaggttctgtgggtgttgtgcctgaggctcttcgacctaaaccaggtcacttgtct
ctctctcagcagcgagtgtatgaggactttgttcggcttccttggcaaaatcaatctggc
cagaattcacattctatgtctgctagtccttcaagcttatctggtgatgctggtctaacc
ggcacatttggttcaacatcagggcaaggtacccctggttacacatctggccctggaact
ctgggacaattggatgttacttcggaggcaattgaaacttcgtcagctgctcttttgagt
gcttcctcaattcatattggcgcaggagctgctcttacccagcagactactgaaaacgat
cccctcaatgcttcattcccttcaacaactttggcccctgaattgcattcagtggatacc
actgatgcagtaaaagaactgggacctacaccacagccgttaccttcatctgctgtaacc
gagcgtcttggaagtagcatctcggaggcttcactgagcacaagggatgcattggataaa
tttcagcttgttgctctgaagttggaaagtttggtgacgactgatggcagagaagctgac
attcagggactgatctctgaggtacctgaaatcatactcagatgtgtaagtcgggatgag
gctgcacttgctgtggctcaaaaggttttcaaaggcttatatgagaatgcatccaatagt
cttcatgtcaatgcttatcttgctattctggctgctgtccgtgatgtttgcaagcttgct
gttaaggagcttactagttgggtgatatattcggatgaggagcgaaagttcaacaaagat
atcactgttggccttattcgaagtgaattgctgaaccttgcagagtacaacgttcttatg
gcaaaacttattgatgggggaaggaataaagctgctactgaatttgcgatgtcacttctt
caaactttggttactgatgaatccagagtcatctcagaactccacaatcttgttgatgct
ctggcaaaggttgcttcaaaacctggatcttctgaatcattgcaacatttgattgagatg
attggaaatccttctgcaagtatggcagttttatccagtgcttctattggaaaggaggat
aagactaggcagtctagagacaaaaaggcacctgggcacacaccagctagcagggaagat
aatagtaatatagaggctctagaaccagatcctgcaggcttcaaggagcaggtttccatg
ttgtttgcagaatggtaccagatctgtgagcttcctggtgcaaatgatggaccttgtaat
cattacattgtacaattgcatcaaaatggactgcttaaaggggatgatacgacagaacgc
tttttccgtattatcatggaactttctgttgcacattgcctatcttctgaagtcatgaat
tctggcacattacaatcacctcagcaagtgcaaactctctctttccttgccattgatatt
tatgcaaaacttgtggtgtcaatccttaagttttgccctgtggaacagggatcaagtaaa
ctctttcttatgtccaagattttgactgtgactgtaagacttattcaaaaagaggctgag
gataggaaagcagcttttaatccaagaccatatttcagattatttattaattggctgtta
gatcttggttccttggaccctgtccctgatggtgctaattttcagatcttgactgccttt
gccaatgcatttcatgctctccatccccttaaagttcctgctttcagttttgcatggctg
gagcttgtcagtcacagaagtttcatgccgaaattgctcacttggaatggtcagaagggt
tggccctatatccaacgattgctggtagacttgcttcaattcctggagccgtttttgagg
aatgctgagctcggagtgccggttcattttctgtataaaggcacactcagggtgctgctg
gttctacttcatgacttccctgagttcctgtgtgattgtcattttaccttctgtgatgtg
attcctccgagctgcatacagatgcgaaatattatccttagtgcttttccacgcaatatg
aggttaccagatccatctactcccaacttaaagattgatttgcttccggaaatcagagaa
ccccctcgcatcctttctgaggttgatgctgctctgaaggcaaaacagatgaaggctgat
gtagatgagtatctcaagatgaggccacaaggaggatctacatttctaactgaactgaaa
caaagactactcctttcaccaagcgaggcagcatcagctggtacccgttataatgttcca
ttaatcaactcactggtgctatatgtcggtatgcaggcaattcagcaactgcagtcgaga
gtacctcatgcacagtcagcagcaagcactgctccaatgagtgtgttcttagttagtgct
gccttggatattttccagactctaatagcagaccttgataccgaggggcgttatcttttt
ctcaatgcaattgcaaatcaattgcgatatccaaacaaccatacgcattacttctccttc
atcttactatacttatttgccgaagcgaatcaggaaattatccaagagcaaatcacaaga
gttttgttggaacggctgattgttaataaacctcatccttggggtctcctcattaccttc
attgagctcataaagaatcctagatacaacttctggaatcgatctttcataaggtgtgca
cccgagattgaaaaactctttgaatctgttgcaagatcatgtgggggcttgaaacctgtg
gacgatagtatcgtttctggttgggtttccgacaatgcacactag
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integrated database retrieval system
