Granulicella sp. 5B5: GOB94_05105
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Entry
GOB94_05105 CDS
T08433
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
grb
Granulicella sp. 5B5
Pathway
grb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
grb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GOB94_05105 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grb03021
]
GOB94_05105 (rpoB)
03400 DNA repair and recombination proteins [BR:
grb03400
]
GOB94_05105 (rpoB)
Enzymes [BR:
grb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GOB94_05105 (rpoB)
Transcription machinery [BR:
grb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GOB94_05105 (rpoB)
DNA repair and recombination proteins [BR:
grb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GOB94_05105 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Vmethyltransf_C
DZR
RnfC_N
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
QMV18139
LinkDB
All DBs
Position
complement(1193178..1197671)
Genome browser
AA seq
1497 aa
AA seq
DB search
MSKTTNSELRAIRTRLDFSKIPTSIQIPNLIEVQRRSYERFLQMDKLPQEREDNGLQSVF
TSVFPITDFRNVSELEFVDYSIGNWECKCGYLKGLNHLRTACTHCGHMVITDPFHPGDVL
CKFCGTYNKNTPDFCTKCGDPVGLQLKYDQAECEERGMTYSAPLKVTIRLKIYDKDPETG
VKTLRDMKEQEVFFGDIPLMSANGTFIVNGTERVIVSQLHRSPGVFFETANNRTYFLGKI
IPYRGSWVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLRTDEEILKTFYTVDTINVKDG
KLSWVVTGEETPTHLVGTRTAVALHDAKKTELVAAGKKVGASSIKHVRAAGITEVEVETS
EFDGAMSAADVIDMTTGELLYEANAELTADKIHKIMQSGVTSFQVFFPERDDVGNIIANT
LRRDSVRKPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLY
ENQDATGLDKRTLTPEDFYGTIRYLLKLRKNIGAVDDIDHLGNRRVRAVGELMENQFRIG
LVRMERAIKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITH
KRRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGF
IESPYRKVKDGQVLDYVAVTNAGESGLRQGDFLEIHESVKRNKELKKDGKRTMDLEPFSF
YLSAWEEDRHTIAQANITLDAELKIVDDLVNARKQGNFVLVPKAEVDYVDVSPKQLVSVA
ASLVPFLEHDDANRALMGANMQRQSVPLLVSEAPFVGTGMEGVTARDSGAVILAKRNGIV
DSVDSERIIVRVEGEHHPTQLSREVGSDIYQLTKFKRSNQNTCINQKPIVRHGDRVVKGQ
VIADGPCTEQGELGLGRNVLVGFMPWRGYNFEDAILISEKLVREDYYTSIHIEEFEIEAR
DTKLGPEEITRDIPNVSEHALRDLDESGIIRIGAKIGHNDILVGKVTPKGETQLTPEEKL
LRAIFGEKAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDQRALQIEQEMVEKLERNLA
DEIRILTDERLKRLDDILGAKEVLADLHDERTNKKLLSKGDILTREIIELISTRNLKRIR
YADKDPRVNEQIDEIEEMTSRQIDVLRKITNEKIGKMSKGDELSPGVIKMVKVYIAMKRK
LSVGDKMAGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGW
AAHTLGAKVAELASQHQKAAEVKEIFTEAFKGTAALNQLLALDDEQTLRVAKGMKRGIWF
GTAVFDGAQESEIKALLAAAGLPSSGKSMLIDGMTGEPFEQPVTVGYIYMLKLSHLVDDK
IHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVFGRT
KIYEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVELVKKTAAHEEAEALPELAVAD
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagacgacgaacagcgaattgcgtgcaatccgcacccgcctcgatttttccaag
atccccacgtccatccagatcccgaacctgatcgaggtgcagcggcgcagctatgagcgc
tttctgcagatggacaaactgccccaggagcgcgaagacaacggcctgcagagcgtgttt
acgtcggtgtttcctattaccgacttccgcaatgtgagtgagttggagtttgtcgattat
tccatcggcaactgggagtgcaagtgcggctacctgaaggggctgaaccacctgcgcacc
gcgtgtacgcactgcggacacatggtgattacagacccattccatccgggcgatgtgctt
tgcaagttctgcggcacgtacaacaagaacacgccggacttctgcaccaagtgcggtgac
ccggtgggtctgcaactgaagtacgaccaggccgagtgcgaagagcgcggcatgacgtac
agcgctccgctgaaggtgacgatccgcctgaagatttacgacaaggacccggagacgggc
gtgaagaccctgcgcgatatgaaggagcaggaagtcttcttcggcgatattccgctgatg
tcggccaacggcacgttcattgtgaacggcaccgagcgcgtcatcgtgtcgcagctgcac
cgttcgcccggcgtcttctttgagacggcgaacaaccgcacctacttcctgggcaagatc
attccgtaccgcggcagctgggtggagtttgaatacgaccagaagaacacgctgtatgtg
cgtatcgatcgcaagcgcaagttcctgggcacgatcttcctacgggcgctcggtctgcgc
acggatgaagagattttgaagacgttctacacggtggacacgatcaacgtgaaggacggc
aagctgagctgggtggtgacgggcgaagaaaccccgacgcacctggtgggcacgcgcacg
gccgtggccctgcacgatgcgaagaagacggagctggtggccgcgggcaagaaggtcggt
gcgagctcgatcaagcatgtgcgcgcggcgggcatcaccgaggttgaggtcgagacgagc
gagttcgacggcgcgatgagcgcggcggacgtgatcgacatgaccacgggcgagctgctg
tacgaggcgaatgcggagctgacggccgacaagatccacaagatcatgcaatcgggcgtg
acgagcttccaggtgttcttcccggagcgcgacgatgtgggcaacatcattgccaacacg
ctgcgtcgcgattcggtgcgcaagccggaagaggcgctgatcgagatctaccgcaagctg
cgcccgggcgacccgccgacgctggacaccgcgacggcgctgttcgagggcatgttcttc
gatccgcgcaagtacgacttctctcgcgtgggccgtttgaagttcaacatcaagctgtat
gagaaccaggatgcgaccgggctggacaagcggacgctgacgcctgaggacttctacggg
acgattcgttacctgctgaagctgcgcaagaacatcggcgcggtggacgacatcgatcac
cttggcaaccgccgcgtgcgcgcggtgggcgagctgatggagaaccagttccgcattggc
ctggtccgcatggagcgggctattaaagaaaagatgtcggtctatcaagagatgtcgacg
gcgatgccgcatgacctgatcaacgcgaagcctgtgatggcggcgatccgcgagttcttc
ggcagctcgcagctgtcgcagttcatggaccagacgaacccgttgagcgagatcacgcac
aagcgccgcctgtcggcccttgggccgggtggtttgtcgcgtgagcgtgcgggctttgag
gtccgtgacgtgcatccaacgcactatggccgcatctgcccgattgagacgcctgaaggc
ccgaacatcggtttgatctcgtcgctgagttgctttgcgcgcatcaacgagtacggcttc
atcgagtcgccctaccgcaaggtgaaggacggccaggtgctggactacgttgctgtgacc
aacgcgggtgagtccgggctgcggcagggcgacttcctggagatccatgagtctgtcaag
cggaacaaggagctgaagaaggacggcaagcgcacgatggaccttgagccgttcagcttc
tacctgtcggcatgggaagaggaccgtcacacgatcgcgcaggccaacattacgctggat
gccgagttgaagatcgtggacgaccttgtgaacgcgcggaagcagggcaactttgtgctg
gtgccgaaggccgaggtcgattatgtcgacgtgagcccgaagcagctggtgtcggttgcc
gcatcgctggtgccgttcctggagcatgacgatgcgaaccgtgcgctgatgggcgcgaac
atgcagcgccagtcggtgccgctgctcgtgtcggaggccccgtttgttggaaccggtatg
gaaggcgtgacggcgcgcgattcgggcgctgtgattctggccaagcgtaacggtatcgtc
gactcggtcgactcggagcggatcatcgtgcgtgtggagggtgagcaccacccgacgcag
ctatcgcgcgaggtcggttcggacatctatcagctgacgaagttcaagcgctcgaaccag
aacacctgcatcaaccagaagccgatcgttcgccatggcgaccgtgtggtgaaggggcag
gtgatcgcagatggtccttgcacggagcagggcgagcttggtctcggccgcaacgtgctg
gtcggctttatgccgtggcgcggttacaacttcgaggacgcgattttgatctcggagaag
ctggtccgcgaggactactacacctcgatccacatcgaggagttcgagattgaagcgcgc
gatacgaagctgggaccggaagagatcacgcgtgatattccgaacgtctccgagcacgcg
ctgcgtgacctggacgagtcgggcatcatccgcatcggcgccaagatcgggcacaacgat
atcctcgttggcaaggtgacgccgaagggcgagacccagctgacgccggaagagaagctg
ctgcgcgcgatcttcggcgagaaggccggtgacgtgcgtgacgcttcgctgacgtgccct
ccgggtatcgaaggcacggtcgtcgatgttcgcatcttcagccgcaagggccaggagaag
gaccagcgtgctctgcagatcgaacaggagatggtcgagaagctggagcgtaaccttgcc
gatgagattcgtattctcaccgacgagcggttgaagcggcttgacgacatcctgggtgcc
aaagaggtccttgcggacttgcacgacgagcgcaccaacaagaagctgctctcgaagggc
gacatcctgacccgcgagatcatcgagctgatttcaacgcgcaacctgaagcgtattcgc
tacgccgacaaggacccgcgcgtgaacgagcagatcgacgagatcgaggagatgacgagc
cgccagatcgatgtgctgcgcaagatcaccaacgagaagatcggcaagatgtccaagggc
gatgagctgtccccgggcgtgatcaagatggtgaaggtgtacatcgcgatgaagcgcaag
ctctcggtcggtgacaagatggccggacgccacggtaacaagggcgttatcgcgcgcatc
ctgccggaagaggacatgccgtatctgccggatggaacgccggtggagatcgtgctgaac
ccgctgggcgtgccttcgcgtatgaacgtcggacagatcctggagacgcaccttggctgg
gcggcacatacgctcggcgcgaaggttgcggagcttgcttcgcagcaccagaaggctgct
gaggtgaaggagatcttcacggaggcgttcaagggcactgcggcgttgaaccagctgctg
gcgctcgatgacgagcagacgctgcgcgttgccaagggcatgaagcgcggcatctggttc
ggcacggcggtgtttgacggagctcaggagagcgagatcaaggcgctgcttgcagcggcc
ggtctgccgagctccggtaagagcatgctgatcgacggcatgacgggcgagccttttgaa
cagcctgtgaccgttggctacatctacatgctgaagctgagccacctggtcgacgacaag
atccacgctcgttcgatcggaccgtactcactgatcacgcagcagccgctgggtggtaag
gcgcagttcggcggacagcgcttcggtgagatggaagtgtgggcgctggaagcgtatggc
gctgcgtacatcctgcaggagctgctgacagcgaagtctgacgatgtgttcggccgtacg
aagatctacgaggccatcgtcaagggtgaggccgcgatcgagccgggcgtaccggagtcg
ttcaacgtgctgatccgcgagctgcagtcgctgtgcctggatgtggagctggtgaagaag
accgcagcccacgaagaggctgaggctctgccagagctggccgtcgccgattag
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integrated database retrieval system
