Garra rufa (doctor fish): 141286890
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Entry
141286890 CDS
T11039
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
grf Garra rufa (doctor fish)
Pathway
grf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
141286890 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141286890 (xpc)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
141286890 (xpc)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rad4
BHD_3
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
141286890
NCBI-ProteinID:
XP_073675105
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Position
15:complement(23939939..23952209)
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AA seq
888 aa
AA seq
DB search
MAKRKETPQKSDTKKPKQIAKNKSASKTQKTKENGKVGKNNRKNSKVVSRASKKIKDSSD
ERKSKYFQDSEVKTEEPEDMSDHSEEMSPKLIEHSSPSKQIKGDKEESEDEDEDEEDWEE
VEEMAEPLGPVDSTELAVESKPVEIEIETPDMARKRQRKEKRKAEFETYLRRMMKRFNKD
LLVDTHKVHLLCLLASGLFRNRLCCESDLLAIALSILPAHFTTLAKKRINNGFLEGLFKW
FQATFTLNPALPEEKEVDLRTVLEKRIECLSARDHEEMTYLFLLVLRSLRLFCRLVLSLQ
PLPLKPPPASKNKTTPTKSSSEKDQSEKSSPESKISPGSKRPSSARKAAVKEERGGKRKK
KKEEGEEKEAAGGQKPKNRRRRSVASKVSYKEDSSEEEGDQSEEEFQPSIEDDSEDSDGA
MKVCRKSKVKGKGQAPRRSSEVKQEEESEEEEEEEEEEEEKQVKKQRCKRKEGKGVDEWL
EVYLESAGKWVCVDVDQGVGQPQLCSDQATQPITYVVGVDDEGYLKDLSSRYDLTWLTSS
RRRRVDSEWWEETMELYKSPDTERGQKEDQEMQAKLLDKPLPTSISEYKNHPLYALKRHM
LKYEALYPATAAVLGYCRGEPVYSRDCVHTLHSRDTWLKEARTVRLGEEPYKMVLGFSNR
SRKARMMSEEKNVKDLPLFGLWQTEEYQPPIAVDGKVPRNEFGNVYMFKECMLPVGCVHL
HLPNLHRVARKLNIDCAAAVTGFDYHCGYAHAVNDGYIVCEEHQEILKAAWENEQDIQQK
KEQEKREKRAVANWTLLVKGLLIKERLKRRYGQQGLASGAGLTQGKEGGAEGLSSDEEEE
GGAQTAPPSLATSWPQNRQEEQEEKIVRRVTKREKRGEEKHLFPFEKV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagagaaaagagacaccgcagaaaagcgacacaaagaagccgaagcagattgca
aagaacaaatcggcatccaaaacacaaaaaaccaaagaaaatggtaaggtgggcaaaaac
aaccgcaaaaactccaaagtggtgtctcgtgcatccaaaaagatcaaagattcctctgat
gagaggaaaagcaagtacttccaggacagtgaagttaaaaccgaagagccagaggacatg
agtgaccacagtgaggagatgagtcctaagctcatagagcactcatcaccatcaaaacaa
atcaaaggagacaaggaagagagtgaggatgaggatgaggatgaggaggactgggaggaa
gtggaagaaatggccgaaccgctggggcctgtggactcgactgaactagcagttgagtca
aaacctgtggagattgagatcgagactccggacatggctcgcaagagacagaggaaggag
aagaggaaagcagagtttgaaacttaccttcgtcgaatgatgaagcgatttaacaaggac
ctgctggtggatacccacaaggtccacctactttgcttgttggccagcggtttgttccga
aacagactgtgctgtgagtctgacctgttggctattgctttgtcaatactgcctgcccat
tttaccacacttgccaagaaacgcataaacaatggcttcctagaggggctttttaaatgg
tttcaagccacattcacattaaaccctgccttacctgaggagaaggaggtggatttgagg
acggtgctggaaaagcgaattgaatgtttatcagcaagggaccatgaggagatgacctat
ctgttcttattggtgctgcggtcattgcgactcttctgtcggttggttctgtcactgcaa
cctcttcctctgaagccaccacctgccagcaagaacaagacgacacctaccaaaagctct
tcagaaaaagatcagtctgaaaaatcctccccagagtccaagatatctcctggatccaaa
cgcccttcatcagcccgtaaagctgcagtaaaagaggaaagaggtggaaagcgaaagaag
aagaaagaggaaggtgaagagaaagaagcagcaggaggacagaaacccaaaaacagaaga
agaagaagtgtagcctcaaaagtgtcatacaaagaagacagcagtgaggaggaaggggac
cagagtgaggaagagtttcagccatccattgaggacgacagtgaagactctgacggggct
atgaaagtatgcagaaagtcgaaggtgaaaggaaaaggtcaggctcctcggaggtcgagc
gaggtcaaacaggaagaggaaagcgaagaggaagaagaagaagaagaggaggaagaagaa
aagcaggtgaagaaacaaagatgtaaaagaaaggaagggaaaggggtggatgagtggttg
gaggtttatttggagagtgctgggaagtgggtttgtgtcgatgtggatcaaggtgttggc
caaccgcagctctgctccgatcaggccactcagccgataacttacgtggtgggtgttgat
gacgaagggtacctgaaagatcttagcagcaggtatgacctcacgtggctgacgtcttca
cgccgacggcgcgtcgactcagaatggtgggaggagactatggagctctacaagtctcca
gatactgagagaggacagaaggaggatcaggagatgcaggcaaagttattggacaagcca
ctgccaacatccatttcagaatacaagaaccatccactgtatgcactaaagaggcacatg
cttaaatacgaggcactctaccccgctacagctgctgtcttggggtactgcagaggagag
ccagtttattcacgagactgtgtgcacacactacattctagagacacctggctaaaggaa
gcaagaactgttcgactaggagaggagccgtacaagatggtgcttggtttttccaaccgt
tctcgaaaagccaggatgatgtccgaagaaaaaaatgtcaaagatctgcctctcttcgga
ctctggcaaactgaagaataccagcctccaattgccgttgatggcaaagtaccacgtaat
gagttcgggaacgtgtacatgttcaaggaatgcatgttacccgtaggatgtgttcacctg
catttgccaaatctgcacagagtggctcgaaaactgaacatagactgtgctgcggcagtg
acaggttttgattatcattgtggatatgcacatgcagttaacgatggctatatagtttgt
gaagaacaccaagaaatcttgaaagcagcctgggaaaatgagcaagatatccagcagaag
aaagaacaagagaaacgtgagaagcgtgcggtggctaactggacactgctggtcaaaggc
ctgttgataaaagagaggctgaagcgtcgctatgggcaacaggggctggcatcaggggcg
gggcttacgcagggaaaagaaggcggggctgaaggactgtcctcggatgaggaggaagag
ggcggggctcagacagctccaccatctctggctacttcatggccgcagaacaggcaagag
gaacaagaggaaaagattgtaaggcgtgtaactaaacgagagaaacgtggagaagagaaa
catctcttcccttttgaaaaagtgtga
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