Garra rufa (doctor fish): 141325178
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Entry
141325178 CDS
T11039
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04141
Protein processing in endoplasmic reticulum
grf04210
Apoptosis
grf04217
Necroptosis
grf04218
Cellular senescence
grf04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
141325178 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
141325178 (capn1a)
04217 Necroptosis
141325178 (capn1a)
04218 Cellular senescence
141325178 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141325178 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
grf01002
]
141325178 (capn1a)
Enzymes [BR:
grf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
141325178 (capn1a)
Peptidases and inhibitors [BR:
grf01002
]
Cysteine peptidases
Family C2: calpain family
141325178 (capn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
141325178
NCBI-ProteinID:
XP_073689799
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Position
2:10714844..10729914
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AA seq
704 aa
AA seq
DB search
MFTYGGIVAQISANRLQAEGVGSFEQALHFQNQNFEALKQECLEGGYLFEDPCFPAEPPS
LGFKELAPYSSKTQGVEWMRPTELCDDPQFIVGGASRTDICQGALGDCWLLAAIASLTLN
ERLLHRVVPHGQSFQDDYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGNEFW
SALVEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRKAPRDLYRIISKALERGSL
LGCSIDITSAFDMESVTFKKLVKGHAYSVTALKQVEFRGRTERLIRIRNPWGQVEWTGAW
SDNSPEWDEIDPSEKDESHLQMEDGEFWMSFSEFLRQFSRLEICNLTPDALSDDDMNHWN
TIKFHGAWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDEEVACSFLVALMQKDRR
RHRRQGQDMHTIGFAIYEIPEEYAGCQNVHLKKDFFLTHSSSARSETFINLREVSTRLRL
PPGEYIIVPSTFEPSKEADFVLRVFTEKQSQTEELDDEILADLEDEEEITEDDIDDSFKA
LFAQLAGEDMEISVRELRTILNRVVSKHKDLKTDGFSMESCRTMVNLLDKDGSARLGLVE
FQILWNKVRKMLGIFREFDIDKSGTMSSYEMRLAVESAGFKLNNRLNQILVARYAENEVI
DFDNFVCCLIKLEAMFRSFQQLDRDGTGTAEMNLSEWLVMTMCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttcacatatggaggaatcgtggcacagatcagtgctaacaggctacaggcagaaggc
gtggggtcttttgagcaggctttacacttccagaaccagaactttgaggccctcaaacag
gagtgtttggaaggaggctacctgttcgaagatccctgcttccctgccgaaccaccctct
cttggcttcaaagaacttgccccatattcctccaaaacccagggtgtggaatggatgcgc
cctacggagctctgtgatgatcctcagttcatcgtgggtggagcctcaaggacagacatc
tgtcaaggagctctgggtgactgctggctcctcgctgctatagcctcgctgactcttaat
gaaagactccttcatagggtcgtccctcatggacagagctttcaagatgactatgctgga
atattccactttcagttctggcagtttggcgaatgggtcgatgttgtgattgatgatcgg
ctcccggtcaaagacggcgagctcatgtttgtccattcagcagaggggaatgagttctgg
agtgccttggttgaaaaagcctatgctaagctaaatggctcttatgaagctctctctgga
ggatcaaccactgagggttttgaagatttcaccggaggagtttcagagatgtacgagctg
cggaaagctccaagagacctgtatcgaatcatcagtaaagccttggaaagaggctccctg
ctgggctgctctattgatatcaccagtgcctttgacatggaatctgtgactttcaagaag
ctggttaagggtcatgcttactcagtgactgctctcaaacaggtggaatttaggggtcgt
acagagaggcttatccgcatccgtaacccatggggtcaggttgaatggacgggagcctgg
agcgacaactcccctgaatgggatgaaatcgatccatctgagaaggatgaatcacactta
caaatggaggatggagagttttggatgtcattcagtgagtttttgcggcagttctccaga
ctggagatttgcaatctgacccctgatgctctgagcgatgatgacatgaaccactggaac
accatcaagtttcacggcgcctggcggagaggcagtacagcgggaggatgtagaaaccat
cccaacacattctggatcaatccacagtataagatcacactgctggaggaagatgatgac
ccagaggatgaagaagtggcctgcagcttcctggtggctttaatgcagaaagaccgcaga
cggcaccgccgccaaggacaggacatgcacacaatcggctttgctatctatgagattcct
gaagagtatgcaggctgtcagaacgtccaccttaaaaaggacttcttcctgacacactca
tcaagcgctcgctctgagaccttcatcaacctgcgggaggtgagcactcgtctccgcctg
cctcccggtgaatacatcatcgtcccctccacctttgaacccagcaaagaggctgatttt
gtcctacgagtcttcactgaaaagcagtcacagacagaggagttggatgatgagatttta
gctgaccttgaggatgaggaagaaattacagaggatgacattgatgattctttcaaggcc
ttgtttgctcagctggctggggaggatatggagatatctgtccgtgagctcaggactatt
ctcaacagagtagtgtccaaacacaaggatttaaagacagatggcttcagcatggagtcc
tgcagaactatggtcaacctcttggataaagatggtagtgcacgattgggtttagtagag
tttcagatcctgtggaacaaagtaagaaagatgttggggatcttcagagagtttgatatt
gataagtcagggactatgagctcttatgagatgcgtctggctgtagaatcagcaggcttt
aagctcaataacagactcaaccagattcttgtagccagatatgctgagaacgaggtgatc
gattttgataactttgtctgctgcttgatcaaactggaagccatgttcagatctttccag
caattagacagagatggaacaggaacggctgagatgaacctatctgagtggctcgtcatg
accatgtgcggttga
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