Garra rufa (doctor fish): 141335663
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Entry
141335663 CDS
T11039
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141335663 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141335663 (skic3)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
141335663 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_14
TPR_11
TPR_8
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_MalT
Fis1_TPR_C
HAT_Syf1_CNRKL1_N
ARM_TT21_C
SHPRH_helical-1st
HAT_PRP39_N
TPR_15
PknG_TPR
TPR_21
Motif
Other DBs
NCBI-GeneID:
141335663
NCBI-ProteinID:
XP_073697294
LinkDB
All DBs
Position
5:17736980..17764252
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
SAYRKATELEPEQLLAWQGLANLYEKSDQADFKVDLPKIYQELITLYETSDKAKCLEVSK
KLVEVYQSEKNYLQVATVWRRLIQVKEGEEGVENSELLELWKEMTRLLQDTVEDQDNETQ
QHLISAFERALEMTVDVPSEAHRILSQDYIKCLSKLPHEVAKLKEVCDATMSRYPTHSYP
LEALSEHYIRTGDCSEEAVRCFSRLSEMDSNNSHALFGLGIKACQDKKYEDAIKSISQGL
KSMRTFIIGWYNLALAQLRMHKYSDSATASSQGLKSSVGNSDDWTHKLQRLKLEALVRTG
KDQDADEALQMLTQISDAKNDPVLLALKGRAHLQKGQTEEAFQVSTELLSSHPGSVEGLT
LKGLAHVAKEQHKQAEESFIEALSGSPDNGELFFLLGRLYWNIGEEMRRDRSKAHTHLLK
AAKLDPHLGSVFRFLGHYYREVAKDQGRARGCYKRAFEMDSSDAEAGAATVDLSMEQGDM
DSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQATADLQAALRADPQDWVCWECL
GEAYLNRRSFTAAMKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDY
VPALKGLGECLLALARSALDDYLDGRAVDLIQNAIHYLFRAVKQRPDLSCLWKLLGDACT
TSRTVSPNRAKVLVPGALCGMDPTDQSHTLDQRQLLTLGERCFGRALKLMPEAPSLWCDL
GLSYYHQCRLLCCLYPEEDPQPLLEKSVQCVKKAIMLDSANHTYWNALGVVAMAKGIENF
TLAQHCFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAL
IAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSKRDSEVYLYNIVQMNAVS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHTDKLGFAL
RGYGRALSDDGQWEEAVRIYSSTPLEELHDLNGLALACFRIGRLPESVQAYEKALAAASS
EKEKAYILTALALIQHRLGSMDHAKTLLFKCSMLKEPVPESLQCLCALGLVHGDVTLASA
TLTELLKLKDPVEGAVEERCLLTCTLLALQGNFSGVHREAARAIHRNPGNPSLWALLSRL
VPQYCPNKADGGAVAGSVACHASLTLGKRALLYSGVNQLASGCHSGEDRRRNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLTGSAPRRENLERTHMTLVSEKVKGLQAEDGLLA
QALEGWVLQQAVTGLKQSSQHDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLLLSEAGN
CVPPAVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQVASQLGDHIGK
MSSLLRLALLALRPCMAGVCFSEWKRLVLEASSEILKMGTSPVALLFQALLQFTMKIDAR
ETRRLLEKMVYASAPGCTETIASVARWYLLRHLHAKDDLELIDTLLVKATAAGDSRLVDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtaaaagctgaactaaaaagtgccagggaagccatcaaaaataaa
gagtttaaagaagctttaaaacattgtaaggctgttctcaaacttgagaagaataactat
aatgcctgggtgtttattggagtggcagctacagagctgcagcagccggatcaggcacag
agcgcctacagaaaggccactgaactggagccagaacaacttcttgcatggcagggttta
gcaaatctgtatgaaaaaagtgaccaagcagatttcaaagttgatctgccaaagatttac
caggaacttattacactgtatgaaacctcagacaaagcaaaatgtcttgaagtgagcaaa
aagttggtggaagtctatcagtcggagaaaaactatttacaggtggccacagtgtggagg
aggttaatccaggtaaaggaaggagaggaaggagtggagaattcagagctgctggaactg
tggaaggagatgaccagactcctgcaggacactgttgaggatcaggacaatgagactcag
cagcacctgatatcagcttttgaaagagctttggaaatgacagtagatgtgcccagtgaa
gcccacaggatcctttcacaggattacattaaatgtctttctaagcttcctcatgaggtg
gccaagctaaaagaagtttgtgatgccacaatgtctcgatatccgacacactcctaccct
ctagaggccctcagtgagcactacatcagaacaggtgactgcagtgaggaagctgtccgc
tgtttcagccgtctctcagaaatggattcaaacaactcacatgctctctttggtctcggt
attaaagcttgtcaggataaaaaatatgaggatgccatcaaaagtattagtcaaggactg
aagagtatgcgcaccttcatcattggctggtataatcttgctctggctcaactaagaatg
cataaatactctgacagtgccacagcttcaagccaagggctgaagtcaagtgtggggaac
tctgatgattggactcataagctgcagaggttgaaactagaggctctggtgaggacagga
aaagaccaggatgctgatgaagctctgcagatgcttacacagatttcagatgccaaaaat
gacccagtgcttttggctttgaaaggaagagctcacttgcaaaaaggccaaactgaggaa
gcatttcaggtctcaactgagctgctgagctctcatccaggatctgtggagggtctcact
ctgaaggggctggcacatgttgccaaagaacagcacaaacaagctgaagagagctttata
gaggctttatccggaagtccagataatggggagctgttctttctcttgggccgcttgtac
tggaacataggagaggaaatgcgaagggaccgtagcaaagcccatacacatttactcaag
gctgctaaactggacccgcaccttggttcagtgtttcgcttcctgggtcattactacaga
gaggtagcaaaagatcaaggcagagccagaggctgctataagagagcgtttgagatggat
tcctctgatgcggaggctggagcagctaccgtagacctcagcatggagcagggggacatg
gactcagctctgactgttctgcagtctgtaacagagagagccactcctggctctgccaaa
tgggcctggatgaggagaggtctctaccaccttaagattggccagcatcaacaggccact
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgctta
ggtgaggcttacctgaaccgcaggagtttcacagcagccatgaaagctttcgataaagca
catacactgcagcccacttctatctacagcctctatcagactgccgctatcaaacagatc
ctcggccggtttaaagaggccgctgcagagtacaggcagatcttagagcaggaggactat
gtgccggcactgaaaggtctgggtgaatgcttgctagcgttggctagaagtgcactggat
gactatcttgatggaagagctgtagatctgatacagaacgccatccattacctcttcaga
gctgtaaagcaaaggccagacctgtcatgcctgtggaagttattaggtgatgcctgcacc
acctccagaactgtgtcaccaaaccgagccaaagtgctggtgcctggagctctgtgtgga
atggatccaactgatcagagccatacattagaccagagacagctcctcactctaggagaa
aggtgctttggtcgtgctttgaaactgatgccggaggcccccagtctgtggtgtgacctc
ggtctgagctactaccaccaatgcagactgctctgctgcctgtatcctgaggaggatcca
cagcctctgctggagaaatctgtgcagtgtgtgaagaaggcgatcatgcttgacagtgca
aatcacacatactggaatgccctcggggtggtcgcgatggcaaagggaatagaaaacttc
acacttgcacaacactgcttcatcaaatctgtaaaagctgaatcaaataatgtggttgcg
tggaccaaccttggtgcattgtatctgaagaagggaaatatcgagctctcacatgaagct
ttcaagattgctcaatctctagagcccctctacgtgaactgctggatcggacaggccctc
attgctgagacagttggcagttatgacaccatggatcttttcagacacaccacagagctg
agcacacatactgagggcgtaaagggttatgcatactgggtttgctctacgctgctggac
aggagcaaaagagactccgaggtctacctctacaacattgtccagatgaatgccgtttct
gctgcccaggtggctctgagcaagtacactgagagaattcagacagacccagacgccttc
atcatgctcggatacctgaacacacacctgcagctgaagaaacaggccactgaggcatat
cgcagagctgtcgagttgcttcaggcgtcccctcatacggacaagctcggctttgctctg
aggggttatggacgtgccctcagtgatgatggacagtgggaagaagcagtgcgtatttat
tcctccaccccactagaggagctgcatgatctcaacgggcttgcgctcgcctgtttcaga
atcggtcgcctgccagagagtgttcaggcctatgagaaagcccttgcagctgcctctagc
gagaaggaaaaggcctatatactcactgcacttgccctgatacagcacaggctgggcagc
atggatcatgccaaaacacttctcttcaagtgctcaatgctgaaagagcctgtaccagag
agtctgcagtgtctgtgtgctctgggtttggttcatggggatgttaccctggcaagtgct
acgcttactgagctgctaaaactaaaggatcctgtggaaggcgctgtagaggaacgctgt
ctgctcacttgcacccttctggccctgcagggcaactttagtggcgtacacagggaggct
gctagagctatacacaggaacccaggaaatccatctctctgggctcttctctccagactg
gtccctcagtactgccccaacaaagccgatggaggtgctgtggctggcagtgtggcatgt
catgccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcagttggcc
tcaggctgccactctggagaggacagaagacgcaacgctttgaaaacaatccagagagct
gtgctgctgtgtccagatgatcctgctgggtgggcggggctaatggctgcctgtcacaca
gagaacaccgcatgcttactcacaggctccgcccctcgccgagaaaatctggagaggacg
cacatgaccctggtgtctgaaaaagtgaagggcctgcaggcagaggacgggctcttggct
caggctctggagggatgggtgctgcagcaggctgtgactggactcaaacagagcagccaa
catgaccaggcagagactctttgctcccaggttctgagtgtttctccagagcatcctgtg
gtgttcctgatgctaaggcaggttcagtgtgagcgcctcctgttgtctgaagccggcaac
tgtgttcctcctgcggtgctggatcagctcagtgctgctgtcatggccaaccacacatct
gtgtccgcctggcattggttggcagaagtgtaccgctctcagggtctgctggctcaggcc
tctgtggcatatagacagagtcttcaggtggcctcacagctcggtgaccacatcgggaag
atgagcagcctgctccgactggccctgctggcgcttaggccatgtatggctggtgtctgt
ttctctgaatggaagcgtctggtgttagaagccagctctgaaatcttaaaaatgggcacc
tcaccagtagctctgctcttccaagccttactgcagttcacaatgaagattgatgccagg
gaaacccgtcgcctgttggagaagatggtttatgcctcagctccagggtgcactgaaaca
atagcgtcagtggcacgttggtacctcctgcgccacctgcatgccaaagatgacctggag
ctgatagatactctgttggtgaaggctacagcagcaggagacagcagactggtggatttc
cacagacgcctttacccatccagctga
DBGET
integrated database retrieval system
