Geotrypetes seraphini (Gaboon caecilian): 117351643
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Entry
117351643 CDS
T09159
Symbol
THOC3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117351643 (THOC3)
09122 Translation
03013 Nucleocytoplasmic transport
117351643 (THOC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117351643 (THOC3)
03041 Spliceosome [BR:
gsh03041
]
117351643 (THOC3)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117351643 (THOC3)
Spliceosome [BR:
gsh03041
]
Complex C
Other components
EJC/TREX
117351643 (THOC3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117351643 (THOC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_Aladin
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
eIF2A
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
RMC1_N
Beta-prop_WDR35_TULP_N
NBCH_WD40
Tricorn_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
B-prop_COPA_B_2nd
PD40
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
Beta-prop_ACSF4
Beta-prop_WDR75_1st
Peptidase_S9_N
Beta-prop_NWD2_C
Beta-prop_Nup120_160
PROPPIN
Cytochrom_D1
WD_LRWD1
DPPIV_N
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
117351643
NCBI-ProteinID:
XP_033783113
UniProt:
A0A6P8Q7F4
LinkDB
All DBs
Position
18:2042657..2056858
Genome browser
AA seq
437 aa
AA seq
DB search
MTRGSASAMVSSSFCAASASEPLSRPLPGASAASFRVPAQTSPEELRATQELSRFPSGAE
LILRGIIELFRETAAHVTATASATSSTLRTRRFPQASRSPVPPRALRTTPPAVAMASQYM
LEMLSHFRGNSKSREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFVLDKDRLVKENAN
YRGHGDSVDQLCWHPTSPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQ
TIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNLFFLTNGNGCINILSYPEL
KPVQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSF
SHDGKMLASASEDHFIDIAEVETGEKLYEVQCESPTFTVAWHPKRPLLAFACDDKDGKYD
SSREAGTVKLFGLPNDS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggggctcagcgtcggccatggtctcctcttctttctgcgccgcctccgcatca
gagccgctctcccggcccctgcctggcgcctcggccgcctccttccgggttccggcgcag
acatcgccggaggagctgcgcgcgacccaggagctctcgcgctttccttccggggcggag
cttattttgcgcggcattatcgagctcttccgcgagacggcagcccacgtgaccgcaacg
gcgagtgctacgtccagcacgttgagaacgagacgcttcccccaagcctcgcgctcgccg
gttccccctcgcgccctccgaaccacgccccctgccgttgccatggcgtcgcagtacatg
ctggagatgttgagccacttccgtggcaacagtaaaagccgcgagttcccggcgcacagc
gcgaaggttcactcggtggcctggagctgcgacggccgcagactggcctcgggctccttc
gacaagacggccagcgtgtttgtgctggacaaggaccggctggtaaaggaaaatgccaat
taccgtgggcacggagacagtgtggatcagctgtgctggcatccgaccagccctgacctc
tttgttacagcatcaggagacaaaaccatccggatatgggatgtgagaaccaccaagtgt
attgccacagtcaacaccaagggagaaaacattaacatatgctggagccctgatgggcag
accattgctgttggaaacaaagatgatgtggtcacattcattgatgcaaaaacacaccgc
tccaaagctgaggagcagttcaaatttgaggtgaatgaaatctcctggaataatgacaac
aatttgttcttcttgactaatggtaacggatgtatcaatatcctcagctatcccgaactg
aagccagttcagtcgatcaatgctcacccatccaactgcatctgcatcaagtttgacccc
acagggaagtactttgccacgggcagtgcggatgcactggtgagcctatgggatgtggat
gagctggtgtgcgtacgctgtttctccagactggattggcccgtgagaacattaagcttc
agtcatgatggcaaaatgttagcatctgcctctgaagatcatttcattgacattgctgaa
gtggagacaggtgaaaagctgtatgaagttcagtgcgagtcccccacattcacagtagca
tggcaccccaaaagacctctgctggcatttgcttgtgatgacaaagatgggaaatatgat
agcagtcgagaggccggcactgtgaagctctttggacttccaaatgactcctga
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