Geotrypetes seraphini (Gaboon caecilian): 117358838
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Entry
117358838 CDS
T09159
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117358838 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117358838 (CNOT1)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117358838 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117358838 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117358838
NCBI-ProteinID:
XP_033796477
UniProt:
A0A6P8QIF0
LinkDB
All DBs
Position
4:176190665..177241579
Genome browser
AA seq
2435 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLTKALK
LSKVQEVIFGLALLNSSSQDLRGFAAQFVKQKLPDLLRSYIDADVGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGLEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMDSSLADFMQEVGYGFCASVEECRSIIMQFGVREVTAVQVARVLGMMART
HSGLADGIPLQSISAPGSGIWSDGKDKSDNVQAHTWNVEVLIDVVKELNPSLNFKEVTYE
LDHPGFQVRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHTEGQLSFIQHSLMNPEIFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAQDKDQPKSAQLPPETLATMLACLQACAG
SISQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPLAAMASL
SIGSSAVPHTQSMPAFPPNLGSAFSTPQSPAKAFPPLSTPNQMTAFSGIGGLSSQLPGGL
GSGSLTGIGSGSLGLPAVNSDPFGQRKLSASGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLDMLQRFKDSNVKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFQSKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
ELNFHSLYSNFLDALKNLEFNKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTDLGVKSLLLEAYMKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLAIDISELKPSSLLKDKDRLKSLDEQLSAPKK
DVKQPEDLPPITTASEYAIRTAGKLWSSVEKQESDVVFTAAVTTPATSTTCTVTVPPQPQ
YSYHDINVYSLAGLAPHITLNPTMFLTALQLTGSRGDSAEIPLFQAHPQLKQCVRQAIER
AVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCRE
PLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEM
DKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNV
PGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQAQAL
RSLLEAVVLARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGR
AYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAV
AFAMQLVKILLVDERSVGHVTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEA
MIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAF
VGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKC
YHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHR
IFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARML
AHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCD
YHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM
PPQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHN
KGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF
AEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKG
EKCTSSYSQIDLYSSIYGYSSQLHSAAWARSKLSR
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctagctttgtctcaaatcagctatctggtggacaattta
accaagaaaaactaccgagccagccaacaagaaatacagcatattgtgaatcggcacggc
cctgaagcagacaggcatttattacgctgtctattctcgcatgtggattttagtggcgat
ggtaaaagcagcggtaaagatttccatcagactcaatttctgattcaggagtgtgtgtca
ctgattacaaaaccaaattttatctcaacactgtcctatgccattgacaatccattgcac
tatcaaaagagtctaaagccctctccccatttatttgctcagctgactaaagcactcaaa
ttaagcaaagttcaagaggtaatttttggccttgctttactgaattcttctagccaggat
ctgcgaggatttgctgctcagtttgtcaaacagaaacttccagatctactgcgttcttac
attgacgcagacgtcggtggaaatcaggaaggtggcttccaagatatcgccatagaggtc
ctgcatcttctcctctcccatctcctttttggacagaagggagcctttggggttggactg
gaacagatagacgcattccttaagacactgcgcagagatttccctcaagaacgttgccct
gtggtgcttgcaccactcttataccctgaaaaacgggatattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggatagttctttggcagacttcatgcaa
gaagtgggctatggattttgtgcaagtgtggaagaatgccgcagtataatcatgcagttt
ggtgttcgggaggttacagcagtccaagttgctagggttttgggaatgatggctagaact
cattcgggtttggctgatggtattcccttacagtctatctctgcacctggtagcggaatc
tggagtgatggaaaagataaaagtgacaatgtacaagcccatacctggaatgtggaagtc
ttaattgatgttgttaaagagctgaatcctagtttaaactttaaagaagtaacatatgaa
ctggaccaccctggatttcaagtccgtgacagtaaaggccttcagattgtggtttatggt
atccagcgaggcttgggtatggaagtgttcccagttgatctcatttatagaccttggaaa
cacacagaaggccagctgtcctttattcagcactctctaatgaatccggagatcttctgt
tttgctgattatccatgtcatactgttgctatagacattctgaaagcaccaccagaggat
gacaatcgggagattgctacatggaaaagcttggacctgattgagtccttgttgcggctg
gcagaagtaggacagtatgagcaggtgaaacaactcttcagtttccccatcaagcactgc
ccggatatgctggttttagctttactgcagatcaacacatcctggcacactttacggcat
gaacttatctccaccctgatgccgattttccttggcaatcaccccaattctgctatcatt
ttgcactacgcatggcatggacagggtcagtctccctcaattcgtcagctgatcatgcat
gctatggcagagtggtatatgagaggagaacaatatgaccaggcaaagctatcacgcatt
cttgatgttgctcaagacttgaaggctttgtcaatgctgctaaatggtactccgtttgcc
tttgttattgatcttgctgcacttgcctctcgaagggaatacctcaaacttgacaaatgg
ctcacagataaaattcgagagcatggggaaccatttattcaagcatgcatgaccttctta
aaaaggcgttgcccttccatattgggtggtctggctcaagataaagaccagcctaagagt
gcccagcttcctccagaaaccctagcaacaatgttggcttgcttacaagcttgtgcaggg
agcatttcccaggagctctcggagaccatcctaactatggtggcaaactgcagcaatgtt
atgaataaagcaaggcagccaccacctggagtcatgcccaaaggtcgtcctcctagcacc
agtagtttggatgccatttctccagtgcagattgaccctctagctgcaatggcatcactc
agtattggtagctcagctgttcctcatactcagagcatgcctgctttccctcccaacttg
ggctctgctttcagtacccctcagtcaccagcaaaagcttttcctcctctctctacacca
aaccagatgactgctttcagtggtattggaggactctcttctcagcttccaggtggactt
ggctcaggcagcttgacaggaataggaagtggaagtcttggcctccctgcagtcaacagt
gatccatttggacagaggaaactgagtgcatctggactcaaccagcctacattccagcag
agtaagatgaagccttcggacttgtctcaggtgtggccagaggcaaaccaacacttcagc
aaagaaatagatgatgaagcaaacagctatttccagcgtatatacaaccaccctcctcat
ccgactatgtcagtagatgaggtattagacatgctacagaggtttaaggactccaacgtt
aagcgtgaacgtgaggtgtttaattgtatgctaagaaacttgtttgaggagtaccgcttt
ttccctcagtacccggataaggagctgcacataacagcctgtctatttggtgggataata
gagaaaggactggttacatacatggcattgggtcttgccctgcgctatgttcttgaagcc
ttgcgcaagccttttcaatccaagatgtattattttggtattgctgcactagataggttt
aaaaatagattgaaagactatccacagtactgtcagcatttggcttctattagtcacttt
atacagttcccccatcatctacaggagtacattgagtatgggcagcagtctcgagatcct
cctgtgaagatgcagggttcaattacaacccctggaagcattgcacttgcccaggcccag
gctcaggctcaagttccagccaaagctcctcttgcaggtcaagtcagcactattgtcacc
acttcaacaaccactactgtggcaaaaaccattacaatcaccagaccaaccggtgttagc
ttcaagaaggatgtaccaccctccattaatacaaccaatatagacactctattggtggcg
acagaccagacagaacgaattgtggaaccaccagaaaatgtgcaggagaagatagctttc
atatttaacaatctgtcccaatctaatatgacacagaaggtcgaagagttgaaggaaact
gtgaaagaggagttcatgccctgggtttcacaatatcttgttatgaagagagtcagcata
gaactcaacttccatagtctgtattcaaactttcttgatgcactgaaaaatctggagttt
aacaaaatggtactgactgagacttataggaacataaaggtactgctgacatctgataaa
gctgcagccaacttctctgaccgctccctactgaagaacttgggtcactggctgggaatg
atcacattagctaagaataaacccattttgcatacagacctaggtgttaaatctttgctg
ctggaagcttatatgaagggacagcaggagctgctttatgttgttccctttgtggcaaaa
gtgttagaatctagcatcagaagtgtggtttttcgacctccaaatccctggacaatggcc
attatgaatgtattagcagagctgcatcaggagcatgatttaaaattgaatctgaagttt
gaaattgaggtgctatgcaagaatctggcaatagatatcagtgaattgaaaccaagcagt
ctcctgaaggacaaagaccggctgaagagcttggatgagcagctttctgctcccaaaaag
gatgtcaaacagccagaggacttaccaccaatcaccacagcaagtgaatatgccatccgc
acagcaggaaagctgtggtcatcagtggagaaacaggagtcggatgtagtttttacagct
gcagtgacgactccagccaccagtaccacgtgcacagttactgttccaccacagccccag
tacagctaccatgatatcaacgtttattcccttgcaggattggcaccacatatcacactg
aatccaacaatgttcctgactgctttacaactaactggttctagaggagacagtgctgag
attcccttattccaggcccacccgcagttgaaacagtgcgtacgtcaggcaatagagcgt
gctgtccaagaacttgtccatccagtggtggatcgttctatcaagatagccatgacaacc
tgtgaacagatagtcagaaaggactttgcattggattcagaagaatctcggatgcgcgtg
gcagcccatcacatgatgcgcaacctcactgcaggaatggccatgatcacctgccgggag
cctctgctcatgagcattgccacaaacctgaaaaatagttttgccacagcactacgggcg
gcatccccacagcagcgggagatgatggagcaagcagctgcacagctagcacaagacaac
tgcgaattagcatgttgctttatccagaaaactgctgtggaaaaagcaggccccgaaatg
gataagaggctagcaactgaatttgagttgagaaaacatgcaagacaggagggacgtcga
tactgcgatcctgtggtgttaacctatcaggcagaacggatgcctgaacagattaggctg
aaggtgggaggtgtggacccaaaacagctggctgtttatgaggaatttgcacggaatgtc
cctggtttcttacctaccaatgacctcactcagcctacagggttcttggcacagcctatg
aagcaagcctgggccactgacgatgttgcacagatctatgataaatgtatcacggagctt
gagcagcaccttcatgctattccacccactttggcaatgaatccacaagcccaggctcta
cgcagtctactggaggcagttgtgctggctcgcaactcccgggatgccattgcagcactt
ggcctgcttcaaaaggctgtcgaagggttgctggatgcaactagtggtgctgatgctgat
ctcttgctccgttatcgtgaatgtcatctcctggtgttaaaagccctacaggatggccgt
gcttatggatctccatggtgcaacaagcagattaccaggtgcttgattgagtgccgtgat
gaatacaagtacaatgtggaggctgtagagttactaattcgcaaccatctagttaatatg
caacagtatgatcttcatctggctcagtcaatggagaatggtttgaactacatggctgta
gcatttgctatgcagctagtgaagatcctgttggtggatgagaggagtgtgggccatgtg
acagaggcagatctattccataccatcgaaacactaatgaggatcaatgctcactccaga
ggaaatgccccagaagggctgcctcaactaatggaggtggttcgatctaactatgaagca
atgattgaccgtgcccatgggggccctaatttcatgatgcattctggaatatctcaagcc
tctgagtatgatgacccgccaggtctgcgggagaaggcagaatacctcctgagagaatgg
gtgaatctctaccattctgcagctgctggtcgggacagtaccaaagctttctctgctttt
gttggacaggtagagcttttggaaagaaagatgcaccagcaaggaattctgaaaacagat
gatttgatcacacgttttttccgcctatgcacagagatgtgtgttgaaatcagctatcgt
gcccaggcagaacaacaacacaatcctgctgccaaccccaccatgatacgagccaagtgc
taccacaacctggatgcctttgtgcgactcattgcattacttgtgaagcattcaggggaa
gctactaacacagtcacaaaaatcaaccttttgaacaaggttcttgggattgttgttggg
gtcctcctgcaggaccatgatgtacggcaaagcgaattccagcagctaccttatcatcgc
attttcattatgctactgctagaactcaatgcacccgagcatgtattagagactatcaac
ttccagacccttacagcattttgcaatacattccatatcctgcgaccaacaaaagctcct
ggctttgtatatgcctggttggaacttatttcccatcggatattcattgcaagaatgctc
gcacatacccctcaacaaaagggatggcccatgtatgcccagctgttaatcgacctgttt
aagtatttggcccctttcttaaggaatgtggaactcacaaaacctatgcaaattctctac
aagggaactttacgtgtgctgctggttctgcttcatgacttcccagaatttctttgtgat
taccactatggtttctgtgatgtgattccacccaactgcatccaactgaggaacctaatt
ttgagtgcctttccacgcaacatgagactcccagaccctttcactcccaatttaaaggtg
gacatgttgagtgagatcaacattgcaccaaggatcctcactaacttcactggagtgatg
ccaccacagtttaagaaggatttagattcctatctgaagacacgttcacctgtcacattc
ctttcagagctgcgcagcaatcttcaggtatcaaatgaacctggtaatcgatacaacatc
cagttgattaatgctctagtactatatgtggggactcaagccattgcacacattcataat
aaaggcagcactccctcaatgagcaccatcactcattctgcacacatggatatctttcag
aatctggctgtggacctggacacagaaggtcggtaccttttcttgaatgcaattgccaat
cagctgcggtacccaaacagtcacacacactactttagctgcactatgctgtaccttttt
gcagaggccaacactgaagccatccaggaacagatcaccagggttcttttagaacggttg
attgttaaccggcctcacccgtgggggctcctcattaccttcattgagctgattaaaaat
ccagcatttaagttctggaatcatgaatttgttcactgtgcccctgaaattgagaagggg
gaaaaatgtacttcgtcttattctcagattgacttatattcgagtatatacggctattcc
agtcagttgcacagtgctgcatgggccagaagcaagctcagcaggtga
DBGET
integrated database retrieval system
