Geotrypetes seraphini (Gaboon caecilian): 117365552
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Entry
117365552 CDS
T09159
Name
(RefSeq) collagen alpha-2(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117365552
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117365552
09142 Cell motility
04820 Cytoskeleton in muscle cells
117365552
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gsh00535
]
117365552
Proteoglycans [BR:
gsh00535
]
Extracellular matrix (ECM) proteoglycans
Others
117365552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117365552
NCBI-ProteinID:
XP_033811935
UniProt:
A0A6P8S1D1
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Position
8:complement(24361941..24406996)
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AA seq
687 aa
AA seq
DB search
MARSSSTLSVLLLNVAWLSLAQISGPPGEPGPPGPPGPAGVPGSDGIDGDKGPLGPPGPA
GAIGEPGQPGANGPPGKPGLEGLIGTKGDPGSAGRPGPKGQPGLPGPSGSPGPGLPGKPG
PPGPVGLPGIIGVRGPKGIRGPVGQAGLPGLPGKPGPPGNIQGLEGSADFLCPTNCPAGP
KGPQGLQGLKGHRGRPGIIGEPGRLGKVGPKGDVGVSGEQGLPGPPGPQGLRGYPGMAGP
KGEMGPSGYKGMVGSIGAAGKLGEEGPRGPPGEAGTKGEVGARGITGLQGVQGPKGKNGL
PGIDGKDGTPGIPGTKGGLGQSGAPGQPGHSGSAGLPGQPGIKGGPGQKGEPGIRGPMGL
QGAPGKPGERGPPGEAGPRGILGLKGDRGERGPVGSIGLQGRTGAKGEQGPPGIPGPQGI
PGVKGDKGFLGKTGPRGDVGDPGLEGLSGVKGKKGDSGEPGVKGQQGIRGDPGFSGPAGD
VGQPGIQGLQGPLGPRGLNGERGVPGMPGPRGIPGRDAGDQHIVDVVLKMLQEQLAEVAV
STNRMALRGGGMMGPPGPPGPPGPPGDQGLHGHPGPRGILGVMGSAGQIGNTGPKGKHGL
KGEQGEPGRGHQGMPGPPGIPGLPGIPGHAVDGKDGERGDPGAPGEPGHLGLPGPAGLPG
ICEATACLAASVYAPASLRESGFVKGP
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctcatccagcaccctcagcgtcctccttctaaacgttgcttggctctcactg
gctcagattagtggcccaccaggtgaaccgggaccacctggtcctccaggtccggctgga
gttccaggatctgatggcatcgatggtgacaaaggtcctctcgggcctcctggtcctgct
ggtgcgataggagagccaggccagccaggtgctaatggacctcccggaaagccaggattg
gaaggtttgattgggacaaagggagaccccggttctgctggacgaccaggaccaaaaggt
cagcccggtctgcccggaccttctggatcccctgggcctggactgccaggaaagcccggt
cctcctggccctgtagggctgcctgggataattggagttaggggccctaaggggatccga
ggacctgtgggccaagcaggcctacccggcttaccagggaaaccaggtccaccaggaaat
atccagggcctggaaggcagtgcagacttcttgtgcccgacaaactgtcctgctggacca
aagggaccccaggggctgcagggactgaaagggcacagaggtcgtcctggaattattggt
gaacctggcagactggggaaggtgggacctaagggagatgtgggcgtttcaggtgaacaa
ggcctccccggtcctccgggtccacagggtctcagggggtaccctggcatggcaggccca
aagggagagatgggtcccagtggttataaggggatggttggatcgatcggagcagctgga
aagttgggtgaagaagggccccgagggccacccggcgaagctgggacaaagggagaagtt
ggagctcgtggcattactgggctgcaaggagtacagggtccgaaggggaagaatggtctc
ccagggattgatgggaaggatggcacccctggtattcctggcaccaaggggggccttggt
cagtctggagctccgggacagccaggccattcagggtcagcgggtttacctggtcagccg
ggaatcaaaggcggtcctggccagaagggtgaaccaggaatacgtgggccaatgggactc
caaggagcacctggaaaaccaggagagagaggtcccccaggtgaagctggaccacgaggg
attttaggcctgaagggtgatcgaggtgaaagaggaccagttggttcaattggattacaa
ggcaggactggtgcgaagggggagcagggacccccaggaattccaggccctcagggcatc
ccaggagtgaaaggtgacaagggattcctcggcaagaccggacccagaggtgacgtgggt
gatcctggtttggagggcttgagtggcgtgaaaggcaagaagggtgattctggtgaacca
ggcgtaaagggtcagcaaggcatcagaggcgaccccggcttcagcggccccgctggtgat
gtgggccaaccaggaattcagggtctccagggtcctctaggtcctcgtgggctcaatggc
gagaggggggtacccggcatgcctggtccccggggaataccaggcagggatgctggcgac
caacacatcgtcgatgtggttttaaagatgcttcaagaacagctggctgaagtggcagtg
agcacaaacaggatggcactcaggggtggcgggatgatggggccacctggaccccctgga
cccccaggaccccccggtgatcagggcttacacggtcaccctgggccacgtggtattcta
ggagttatggggtctgcagggcagatcggcaacacaggcccaaaaggtaaacatgggttg
aaaggcgagcagggggagccaggacgtggacaccagggaatgccaggaccaccagggatc
ccaggccttcctggcatccctggtcatgctgttgatggcaaagatggtgaacgtggtgat
ccaggagccccaggagaacctggtcacttagggctgcctggtcccgccggccttcctgga
atctgcgaagccactgcgtgtttggcagcttctgtgtatgcgcctgcgtccttgagggaa
tctgggtttgtaaagggaccctga
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