Geotrypetes seraphini (Gaboon caecilian): 117367511
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Entry
117367511 CDS
T09159
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117367511 (COL25A1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117367511 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117367511
NCBI-ProteinID:
XP_033815988
UniProt:
A0A6P8SHM0
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All DBs
Position
1:312823821..313229706
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AA seq
963 aa
AA seq
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MDRHLMAPVLSQVKEQVNLDTLNASLSSEEPTPPPQPPHSPGLEESHPALEGTSSSPQTS
LPPGLQNSAQSLEGPKELTPVQMVIGQGSEVLPKDKEITINDVWLSINRIESSLQKTDLK
LCQFSLDITVKINEHDVKQQLLKMSLSDILQYTKVDTLELDNLYYIPRVSKEILEEGAMD
KLVSPDSFNISQFLESSKDIIDKRATLIVVFKTDPCNKTSRCTGSVMMPVSAISLTPRLA
VSLTTFTMLTNCSAVWKVVNDTAERGVKLITDFATGITTDSVQREALLQKVNSIAGFILV
FLDNWTDTEKTLKSHFVHQKLKCLYVKPVRIGLATSVKGTVLQENEERGEEEVNLGQPGP
QLLKITSQMTAETFECGWHTANYLSCIAEIFSENTESDKCYLKAVNEIMLGSAGPKGEKG
DQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGSPGPRGPPGDTG
KDGPRGLSGLPGDPGKLGEQGLMGPQGPPGQKGSDGTPGIAGMDGQKGEPGPHGAPGQDG
TPGLKGDIGEPGEKGDFGDSGPKGELGAKGDPGNSAAGIKGEPGESGHPGQKGEPGLPGL
PGLPGIKGEPGFIGPQGEPGLPGLPGTKGEKGEAGPPGKGERGELGAPGPKGEPGESGTR
GPKGSKGDPGDKGDSGLMGPRGPPGQKGDRGATEIIDYNGNIQEALQRITTVTVTGPPGP
AGSPGLQGPKGEAGSVGPPGVDGEQGPKGSKGDRGESGIPGEKGGIGLPGLPGTNGVKGE
KGDLGLPGSQGASIIGPPGPSGPHGPPGPMGPHGLPGPKGEPGLNGLKGARGEPGQKGDR
GPLGLPGASGLDGKPGPRGTDGPVGPHGPAGPKGDRGEKGAVGDPGPRGPYGLPGKDGEP
GLDGFPGPRGEKGDPGESGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGC
WQK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggatcgccaccttatggctcctgtgttgtcgcaagtgaaagagcaggtaaacttggat
actcttaatgcttctctgtcctctgaggaacctacaccacctcctcaaccaccacattct
ccagggttagaagagtcccacccagcgttggagggaacttcttcttccccacaaacatct
ttacctcctggactacagaactcagcacaatccttggagggacctaaagagctgacccca
gtgcagatggtcatagggcaaggctctgaagttctccctaaagataaagagatcactata
aatgatgtatggctaagtattaacagaatagagtcatcattacaaaaaactgatttgaaa
ttatgtcagttttccttagatataacagtgaaaattaatgaacatgatgttaaacagcaa
ctcttgaaaatgtccttgagtgatatattacaatacactaaagtggatactcttgaacta
gataacctttattacattccaagagtgtctaaagaaatacttgaagagggtgcaatggat
aaacttgtttcacctgacagttttaatatatcacagttccttgaatcctctaaggacata
attgataaacgagcaactttaatagtggtcttcaaaacagatccttgcaacaagacctca
cgctgcactgggtctgtgatgatgccagtgtcagctatcagtttaacacctcgcttggct
gtgtcgttaacgaccttcactatgttgacaaactgttctgcagtatggaaggtggttaac
gacacagccgagcgaggtgttaaactgataactgactttgccactggcatcaccacagac
tcagtgcagcgtgaggccttgttgcagaaagtgaacagcattgcaggctttatcctggtt
tttctggacaactggacagatactgaaaagaccctgaagagtcattttgtgcatcagaag
ctaaaatgcttgtacgttaaaccagttcgaattggtttagcgacgagcgttaaaggcaca
gtcctgcaggaaaacgaggaaagaggggaagaagaggtgaacctgggtcaaccaggacct
caacttctaaaaatcacttctcaaatgactgctgaaacttttgaatgtggctggcatact
gccaactatttatcttgtattgctgaaatattttctgaaaatacagaaagtgacaagtgt
tatctaaaagctgtgaatgaaataatgttgggctcagctggtccaaaaggcgagaaggga
gatcaaggtgatcagggccctcggatggtgtttcctaagatcaatcatggctttctctct
gctgatcagcagctcattaaacgccggctcattaagggggatcagggtcaagctggacca
cctggacctccaggaccccctggctcaccaggacctagaggccctcccggtgacaccggt
aaagatggtcccagaggactgtctggactaccaggagatccaggcaaactaggagaacaa
ggcttgatggggcctcagggacctccaggacaaaagggttctgatggcactcctggtatt
gcaggaatggatgggcagaagggtgaaccaggcccccatggtgcaccaggccaggatgga
acaccagggcttaagggtgacattggagaacctggtgaaaagggagatttcggagacagc
gggcccaaaggtgaactgggagcaaagggagaccctggaaactctgcagcagggattaag
ggtgaacccggtgaatcaggccatccggggcaaaagggtgaaccagggcttcctgggctt
cctggacttcctgggataaagggtgaaccaggtttcattggtccacagggagagcctggc
ttaccagggttaccaggaacaaagggtgagaaaggagaagcagggccccctgggaagggt
gaacgaggtgaacttggtgctcctggacctaagggtgaacctggtgaatctggaactagg
ggtccaaaagggtcaaagggcgatcctggagacaaaggagattcaggactcatgggcccc
aggggcccaccaggacaaaagggtgaccgaggagcaacggagatcatagattacaatgga
aatatacaggaagcactgcagaggattaccactgtaaccgtcacgggccccccgggacct
gcagggtcaccaggacttcaaggaccaaagggtgaagcaggatctgtaggacctccagga
gtggatggggagcagggtcctaaaggctcaaaaggtgacagaggtgaatcaggaataccg
ggagaaaaaggtggaattggacttcctgggttgccaggtaccaatggcgtgaaaggagaa
aagggagatcttggtttgcctggttcacaaggtgcttctatcattggccctccgggacct
tctggccctcatggtccaccaggccccatgggaccacatggacttccaggcccaaagggt
gaaccggggttaaatggtcttaaaggagcgaggggtgaaccaggtcaaaaaggtgacaga
ggaccccttggtcttccaggagcatctggcttagacggaaagccaggaccccggggtacc
gatggtccagttggcccacatggcccagcaggtcccaagggagacagaggtgagaaagga
gcagtaggtgatcctggacccagaggaccttatggtttgccgggcaaagatggagagcct
ggcttagatgggtttccaggtccacgtggagaaaaaggtgacccaggagaaagtggtgaa
aagggggaaaagggaaagaaaggcaaaaaggggcctaaaggggagaaaggagaacagggt
gcccctggattagatgcaccttgcccgttgggcccagatggactaccaatgcctggttgt
tggcagaagtga
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