Glycine soja (wild soybean): 114405200
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Entry
114405200 CDS
T06057
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114405200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114405200
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114405200
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114405200
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
Dredd_2nd
Motif
Other DBs
NCBI-GeneID:
114405200
NCBI-ProteinID:
XP_028223634
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All DBs
Position
3:34776151..34786143
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AA seq
1013 aa
AA seq
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MDLISCYRFLMILYIFLQNSFQAPGSEVQDKISLMINNTFAANIDSKAKEFTEILKEQYY
PWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIIQATYENCKVLLGSELIKSSSE
ERSLLKNLGSWLGKLTIGRNQVLKAREIDPKSLIIEAYEKGLMIAVIPFISKVLLKHLGV
DMMDVTPTSLLLKDRKREMEGNPDFSNKDVGASSKMIIDLKCGPVPPVNEAELPLVVTNP
SNTGAHPHVVSQYAGPLHISSGALMEDEKFTPLGLSDQLSSAQVLLQATPASAPISISRL
PIQIPDIGTRAIINEKLGGFGLQMYFNSVVPIAMDRAIKEIASSSFVQRTVIMATKTTME
LVLKDYAMESDQTRILKAAHLMVTSLAGSWAHVTCKEPLWVSIYSQLRNSLQNLNITNEI
LEQAMQLVTNDNIDLGFAVIEQVAADKAKNTIDTEITQQLFLRRKHREGFSSTFFYANKE
EFKGVDSVEPDPSGFCKQVAVLFKEWYRICEFPGANDTASAHFILQLHQNGLLKGDDVTD
HFFRQLMELAIAHCLSTEVINLGSLQSQPPTMSFLAIDIYAKLVFSILKGSNELVLLSKI
MAVTVRFIIKDAEEKNALFNPRPVFRLFINWLLDLGLLEPVTDGANLQILTVFANAFHAL
QPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGEP
VRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSACPRSMRLPDPST
PKLKIDLLQEINQSPSILSEVDAALKAKQIKTHVDEYLKTRQPSWSFLSELKYKLLLSPN
EAASAGTRYNRPLINSLVLYVGMQAIHQLQERTPHTQTSANAVPVVALFSVDTALDIFKT
LIVDLDSEGRYLFLNAIANQLRYPNTNTHYFSLLLLHLFEDSNLEVIQEQITRVLLERLF
VERPHPWGILITFLELYRNPRYNFRNRSFITPEIEKLFESVVSRAGPKPVDES
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggatttgatcagttgttatagattcttgatgattttatatattttcttacaaaatagt
tttcaagctccagggtcagaggttcaggacaagatatcacttatgattaataatactttt
gcggctaacattgattctaaagcaaaagagttcactgaaattttgaaagagcagtattat
ccttggtttgcacaatatatggttatgaaaagagcaagcattgagccaaattttcatgac
ttgtacctgaaattcctggataaagttaattcaaaggctttgaacaaagagattatccag
gcaacttatgaaaattgcaaggttcttttaggatcagagctcataaaatcaagttcagag
gaacgctctttgcttaaaaatttgggcagctggcttggaaagttaacaattggccggaat
caggttttgaaggctcgtgaaatagacccaaaatctttgattatagaggcatatgagaag
gggctaatgattgctgttattccatttatatcaaaggttttgttaaaacatcttggtgta
gatatgatggatgtcacaccaacttccctcctgctgaaggatagaaaaagagaaatggaa
ggaaatcctgatttctctaataaagatgtcggggcatcatcaaaaatgattattgatcta
aaatgtggccctgtacctccagtaaatgaagctgaattaccacttgtagtcaccaatcca
tccaatacgggggctcatccacatgtagtgtctcagtatgctggtcctcttcatatttcc
tcgggagcattgatggaagatgaaaagtttacacctctgggattgtctgatcaactttcc
tctgctcaagtactgttacaagcaactcctgcctcagctcctatttctattagccggctt
ccaatacagatacctgatattgggactcgtgctattatcaacgaaaaacttggtggtttt
gggttgcaaatgtattttaatagtgtggtacccattgcaatggacagggctatcaaagag
atagcatctagtagttttgttcagagaactgttatcatggcaacaaaaacaaccatggag
cttgttttaaaggattatgctatggaatctgatcagacgcgtatattaaaggcagcacac
ttgatggttactagtcttgctgggagttgggctcatgttacatgcaaagaaccattatgg
gtatcaatatatagtcaactgaggaattcacttcaaaacttaaatattactaatgaaatt
ttggaacaagctatgcaacttgtcaccaatgataatattgatctgggatttgcagtcatt
gaacaggttgctgctgataaggcaaaaaacaccattgatacagagattactcaacaactc
tttttgagaaggaagcatcgagaaggtttcagttctacatttttttatgcaaacaaggaa
gaattcaaaggggtagattctgttgaaccagatccttctgggttctgcaagcaggttgcc
gtgttgtttaaagaatggtacaggatatgtgaatttcctggtgccaatgatacagcttca
gcccacttcatcttacaattgcatcagaatgggctgcttaaaggggatgatgttacagat
cactttttccgacaattgatggaactagctattgcacattgcttatccactgaggtgatt
aatttggggtcactgcaatctcaaccaccgacaatgtcatttcttgcaattgatatttat
gcaaagcttgtcttctcaatcttgaagggatcaaacgaacttgttcttctttccaagatt
atggcagttactgtccgattcattataaaagatgcagaggagaagaatgccttgtttaat
ccaaggccagttttcagattattcatcaactggcttctagatcttggtttgctagagcct
gttactgatggtgcaaatctccagattttgactgtttttgccaatgcatttcatgcttta
cagccgcttaaagttcctgcattcagttttgcatggcttgagttgattagtcacaggagc
ttcatgccaaaaatgttgactggtaatggtcaaaaaggttggccttatatccaaaggttg
cttgtagatctgttccaatttatggagccttttctgaggcatgctgaactaggagaaccg
gttcgtgtcctctataaaggcacacttagggtgctcttagtgctacttcatgacttcccg
gagtttctctgtgattatcactttaccttttgtgatgttattccttcaagttgcatacag
atgaggaatatcattctaagtgcatgtccgcgtagtatgaggctgccagacccatctact
cctaaattgaagattgatttgcttcaagaaataaaccaatcgccgagcattctgtcggag
gttgatgcagcacttaaagcaaagcagataaagacccatgtagatgaataccttaagaca
agacaaccgagttggtcatttttatctgaactgaagtataagctgcttctctcaccaaat
gaagcagcctctgctgggactcgatacaatcggccattaattaattcgcttgtgctatat
gtaggaatgcaggcaatccatcagcttcaggaacgaactccccatacacaaacatcagca
aacgctgtccccgtcgtagccttattttcagttgatactgcattggatattttcaaaaca
ctaattgtggacttggactctgaagggcgctaccttttcctaaatgctattgccaaccaa
ctgcgttatcctaataccaatacacactatttttccctcctccttctgcacttgtttgaa
gactcaaacctggaagttatccaagaacagataactagagtcttgctagaacgcctattt
gttgaacgtcctcatccctggggcatcctcattacttttttggagttgtacaggaaccct
aggtacaatttccggaaccggagtttcataacgccagagattgaaaaactttttgagtcg
gtggtgtctcgagcaggtccaaaaccagtggatgagagctga
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