Geomonas subterranea: KP001_08020
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Entry
KP001_08020 CDS
T07936
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
gsub
Geomonas subterranea
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsub03000
]
KP001_08020
Transcription factors [BR:
gsub03000
]
Prokaryotic type
Helix-turn-helix
Other families
KP001_08020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
AAA_2
HTH_8
PAS_4
AAA_16
THOC7
PAS_8
PAS
AAA_7
MCM
DUF815
AAA_22
TsaE
AAA_19
PAS_9
Microtub_bd
AAA_3
Rootletin
Motif
Other DBs
NCBI-ProteinID:
QXE92458
LinkDB
All DBs
Position
1848362..1850131
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AA seq
589 aa
AA seq
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MGIDKDKSRLNAIYKPRPAAQHRISAVPVPSPPLTKEEMQRLVQQLEIHQIELETQNEEL
RQAREELEVSLNNYSELYDFAPLGYFTFDINGVIRQVNLTGAQLLGVARHLLVDTPFTRY
IADAQGRELFPRHLASVAQNSTPQQCQIRLKGEDDSIVFTQFRSVRVDGSSKKDGHVRIF
CSVVDDTIARRLKEDLQKSHDSLESTVSSRTGELAGTNKLLAREIEERKKTEESLQEAYS
VIERLKDRLQAENIYLQQEAARQYNFGEIIGQSEALAQVMARVEQVAPMNATVLLQGETG
TGKGMVARAIHNGSVRRKRPMITVNCTALPVTLVESELFGREKGAFTGAFARQIGRFELA
DGGTIFLDEIGDMPLELQSKLLRVIQDGEFERLGGNQTIKTDVRIIAATNRNLEQEIRTG
RFREDLYYRLNVFPILMPPLRQRSEDIPLLVDFFLAKFNKKNGREITTVPKETIRALQQY
QWPGNVRELESVIERAVITSQGSTLQVLDRFDSFRSQEDAADKSWQEAGEERKWPEDIKT
LVDLERDHILSVLLKTGWRIEGGSGAAVILGINASTLRARMRKLGIVRK
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgggtattgacaaagacaagagccgtctgaatgcgatctacaaaccacgccccgccgca
caacatcgtataagtgccgtacctgtcccatcgccgcccttgacgaaagaagaaatgcaa
aggcttgttcagcagctcgaaatccaccagatcgagcttgaaacgcagaacgaggagtta
cgccaggccagggaagagcttgaagtctcacttaacaactactcagaactatatgacttt
gccccgttaggctatttcaccttcgacataaacggagtgatacggcaggtaaacctgacc
ggcgcccaactactgggagtggcgcgacacctgctggtcgacacccccttcacccggtat
atcgccgatgcgcaaggacgggagctttttccccggcaccttgccagtgtcgcacaaaat
tcgaccccacagcagtgccaaatcagactgaaaggagaagacgactctatcgtcttcacc
cagtttcgctcggtcagggtcgacggcagcagtaagaaggacgggcatgtccgtatcttt
tgctcggtggttgacgatactattgccaggcgcctgaaagaagacctgcagaagtctcat
gatagccttgaatcaactgtgtcaagccggaccggcgaactggcggggacgaacaagttg
ctcgcgcgtgaaattgaggagcgaaagaagacagaggagtcactccaggaggcctactcc
gtcatagagcggctaaaggaccgactccaggcagaaaacatctacctgcagcaggaagct
gcccggcagtacaacttcggagagatcatcggacaaagcgaggccctggcgcaggtaatg
gcccgcgtcgaacaggtagctcccatgaacgccacggttctgctgcagggtgaaaccggt
accggcaagggaatggtggcgcgagccatccacaacggttctgtccgcaggaagcgcccg
atgataacggtcaactgcacggcgctgccggttacccttgtggagagcgaactcttcggg
cgggaaaaaggcgccttcaccggggctttcgcacggcagatcggacgctttgagctggct
gacggcggcaccatattccttgatgaaatcggcgatatgccgcttgaattgcaaagcaaa
ctgctcagggtcatccaggacggagaattcgagcgactgggtggcaaccagaccatcaag
accgatgtacgtatcatcgcggctaccaaccgtaacctggagcaggaaatccggaccggc
aggtttcgggaagacctctactaccggctcaatgtatttccaatcttgatgccgccgctt
aggcagcgcagtgaagacataccgctgcttgttgatttttttctcgccaagttcaacaaa
aaaaacggcagggagatcaccaccgtcccgaaggagaccatacgcgccctgcagcaatac
cagtggcctggcaacgtgcgggagttggaaagtgtaatagagcgggcagtaatcacgagc
caagggagcactttacaggtgctggaccggttcgacagcttccggtcgcaagaggatgcc
gcagataagagctggcaggaagctggtgaagagcggaagtggccggaagatatcaagacc
ctcgtcgacctggaacgcgaccacatcctcagcgtcttgctgaaaacaggctggcgcatc
gaggggggaagtggcgcggctgtgattctaggaatcaacgccagcaccctgcgcgcccgt
atgcgaaaattaggaatcgtccgtaaatag
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integrated database retrieval system
