Geomonas subterranea: KP001_12400
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Entry
KP001_12400 CDS
T07936
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
gsub
Geomonas subterranea
Pathway
gsub03030
DNA replication
gsub03430
Mismatch repair
gsub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KP001_12400 (holA)
03430 Mismatch repair
KP001_12400 (holA)
03440 Homologous recombination
KP001_12400 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsub03032
]
KP001_12400 (holA)
03400 DNA repair and recombination proteins [BR:
gsub03400
]
KP001_12400 (holA)
Enzymes [BR:
gsub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KP001_12400 (holA)
DNA replication proteins [BR:
gsub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KP001_12400 (holA)
DNA repair and recombination proteins [BR:
gsub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KP001_12400 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
CPSase_L_D3
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
QXE89260
LinkDB
All DBs
Position
complement(2855124..2856119)
Genome browser
AA seq
331 aa
AA seq
DB search
MKPEEFNKAVEKGELASLYLLFGDEPYLVERAVKKLLDRAVDPGFRDFNLDVFYGNECKG
EEVFSAAQTLPMFADRRVVLVKKGGDLSAHAMEVLLPYLQDPSPGTCLILQAEKVDGRKK
FYAELKKRGEAVEFKRPYENQLGPYVRDEVRAAGKKIEPAAAELLGYLVGNNLQELVSQI
EKLCIYCGKKETVAVADVKAIVSDTKVESVFEFTDALGSKDLPRALKMLTALLQDGEVPL
RMLGAVARHFRQLWQVRELLDKKVPQSELAKASGINPYFLNKVTAQARNYTVVELQRIFE
RMLELDLAFKSGGLEEPLLERFVMDACRRQP
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggaagagttcaacaaggcggtggaaaagggagaactggcatcgctgtacctt
ctgttcggggacgagccgtacctcgtggagcgcgcggtcaagaagctgctggaccgggcc
gtggatcccgggttccgcgacttcaacctcgacgtcttctacggaaacgaatgcaagggg
gaggaggtcttcagcgccgcccagaccctccccatgttcgccgaccgccgtgtcgtgctg
gtgaagaaggggggggatctttccgctcacgccatggaagtgctgctcccttaccttcag
gacccgtcgcccggtacctgtctcatcctgcaggccgagaaggtggacgggcgcaagaag
ttctacgccgagttgaaaaagcgcggcgaagccgtcgagttcaagcgaccctatgagaac
cagctcgggccctatgtgcgcgacgaggtgcgcgccgccggcaagaagatcgagcccgcg
gcggccgagctgctgggctatctggtcggcaacaacctgcaggagctcgtctctcagatc
gagaagctttgcatctactgcggcaagaaggagacggtcgcggtcgccgacgtcaaggcg
atcgtctccgacaccaaggtcgagagcgtcttcgagttcaccgatgccctggggagcaag
gatctcccccgcgccttgaagatgctgaccgcgctgctgcaggacggcgaggtccccctg
cgcatgttgggagcggtggcgcggcacttccgccagctctggcaggtgcgggagcttctg
gacaagaaggtgccccagtccgagctcgcgaaggcgtccgggatcaacccgtacttcctg
aacaaggtgacggcgcaggcgcggaactacacggtagtggaactgcaacggattttcgag
cggatgttggaactggacctcgccttcaagtcaggcgggctggaagagccattgctcgag
cgtttcgtgatggatgcctgcaggcgccagccatag
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