Parageobacillus thermoglucosidasius C56-YS93: Geoth_0071
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Entry
Geoth_0071 CDS
T01531
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Geoth_0071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gth03400
]
Geoth_0071
Enzymes [BR:
gth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Geoth_0071
DNA repair and recombination proteins [BR:
gth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Geoth_0071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
DUF3473
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEH46131
LinkDB
All DBs
Position
58379..61912
Genome browser
AA seq
1177 aa
AA seq
DB search
MRSLHRYFAENQDIRSIIGGIEAGLKEQLIVGLSGSARSVFISSLYKETDRPLLVITHNL
FQAQKIYDDLVQLLGTEEVFLYPVNEVIATELAIASPELKAQRLEVMNYWTKRDKGVVIC
PVAGLRRLLPPVSLWKNNILTLEVQQNIDVEYCKKQFVQMGYKRVATVSAPGEFSVRGGI
IDIYPLTAELPYRIELFDTEIESIRTFTADDQRSRDEVRQITIGPADEMIVYGEMLERGI
ARIEAGLTESLHKLKDEKAKQLLLEHISSELEQLKQGQEIEQQYKYMALFYEEPASLLDY
MPENGILLMDEMSRLQEAAESLDKEEAEWYTSLLSEGKIIHDVPISHSFSQLLQKHRKQR
IYLSIFLRHVPHTRPENIVNISCKQMQNFHGQMSLLKSELERWKKAKYAVVFLTPNAERM
KKLQSVLEDYEIDVAPLNREAVLMHGKYQMIEGDLNTGFELPMQKLAVITEEELFKKRVK
RPIRRQKLSNAERIKSYSELRVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGSD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPITVGLLNRFRTRKQQAETIK
GLKDGTIDMVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVREAIERELAREGQVFFLYN
HIEDIDVKAEEISQLVPEARVTYVHGRMSETELESTMLAFLEGQYDVLVTTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRKGVKQEEAKHE
ITIDLEVDAYIPDTYISDGLQKIDMYKRFKAVETMEDVEMLREEMLDRFGEYPDEVAYLF
QIAEIKVYAKQTGVEVIKQQKQQVDILFAENASKEVEIQRLSKIGGQYGRLFGFGMDGSK
LKIVLYIKDLKPQEWLMILYETLKELSGVKDEKSIIA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgcgttcgttgcatcgctatttcgctgaaaaccaagatattcgttcgattatcgggggg
attgaggctgggctgaaagagcagctgattgtcggattatctggttccgcccggtctgtt
ttcatttcatcgctttataaggaaaccgatagaccgcttttagtgataacgcataattta
tttcaagcgcaaaaaatatatgatgatcttgttcaattgcttgggacggaagaggtattc
ctctatccggtaaacgaagtgattgccacggaattggcaatcgccagcccagaactaaag
gcgcagcgtttagaagtgatgaattattggacgaaacgcgacaaaggggttgtgatttgt
cctgtcgccggattgcggcgcctgctacctcctgtgtcgttatggaaaaataatatattg
acattggaagtccagcaaaatatcgatgttgaatattgtaagaagcaatttgtccaaatg
ggatacaagcgtgtagcaactgtgtcagcccctggggaatttagcgttcgcggcgggatt
atcgatatttatccattaacggcggaattaccttatcggattgagctatttgatacggaa
attgaatcgatccgcacatttaccgcggatgatcagcgctcccgtgatgaagtgcggcaa
ataacgattgggcccgccgatgaaatgattgtttacggggaaatgctagagcggggaatt
gcgcggattgaagcgggattaacggaaagccttcacaaattaaaagatgaaaaagccaaa
caattattgctggaacacatatcgtcagagcttgaacagttgaaacaagggcaagaaatt
gaacaacaatataagtatatggcgctcttttatgaagagcctgctagtttgctagactac
atgccggaaaatggaatattgttgatggacgaaatgagcagattgcaagaagcagcagaa
agtcttgataaagaagaggcagaatggtatacaagtttgctttcagaaggaaaaattatt
catgatgtgccaatttcccactctttttcccaattattgcagaagcatcgcaaacagcgg
atttatttatcaatctttcttcgccatgttccgcatacacgtccagagaacatcgtgaat
atttcctgcaaacaaatgcaaaacttccatgggcaaatgtcgctgcttaagtctgagctg
gagcgttggaaaaaagcaaaatacgctgttgtttttttaacgccgaatgcagaacggatg
aaaaagttgcaatcggtgcttgaagactacgaaatcgatgtcgctccgctgaaccgtgaa
gcagtgctgatgcacggcaaatatcaaatgatcgagggcgatttaaacacaggattcgag
ctgccgatgcaaaagcttgccgtgattacggaagaagaattgtttaaaaagcgggttaag
cggccaatccgccgccaaaaattgtcgaacgcagagcgcattaaaagctattcggaattg
cgagtgggcgactatgtggtgcatgtaaaccacggcatcggcaaatatttgggaatcgaa
acattagaaattaacggcgtccataaagactatattcatattcaatatcaaggcagcgat
acgttgtatgtgcctgtggatcaaatcgatcaagtgcaaaagtacgtaggctctgaagga
aaagagccaaagatttacaaattaggcggatccgaatggaagaaagtgaaaaagaaagta
gaatcgtctgtccaagatatcgctgaagatttgattaagctgtatgcggaacgggaggca
agcaaaggatacgcgttttccccggatacagaaatgcagcgggaatttgaagcggcgttt
ccgtaccaagaaacggaagatcagcttcgttcgatcgaggaaatcaagcgcgatatggaa
agcgacaagccgatggaccgtcttctttgcggcgacgtcggctacggaaagacggaagtg
gcgctgcgggcagcgtttaaagcgattatggacggaaaacaagtcgcgtttctcgtaccg
acgacgattttggcccagcagcattatgaaacggtccgggagaggtttcaagggtttcca
attaccgttgggctgttaaaccgctttcgcactagaaaacagcaggcggagacgatcaaa
gggctgaaagacgggacgattgatatggtcatcggcacacaccgcctgttatcgaaagat
gtccagtttaaagatttaggactgctcattatcgacgaagaacagcggtttggcgttacc
cataaagaaaaaatcaagcagcttaaggccaatattgatgtgttgacgctaacagcaacg
ccaattccgagaacgctgcatatgtccatgatcggtgtgcgcgatctgtcgattattgaa
acgccgccagaaaaccggtttccggtgcaaacatatgtgatggaatatacccctgaactg
gtgcgggaagcaattgaacgggagctggcaagagaagggcaagtctttttcttatacaat
cacattgaagatattgatgtgaaagcggaagaaatttcgcagctcgtcccggaagcgcgc
gtgacgtatgtgcatggacggatgtcggaaacggaattggagtcaacgatgctggcgttt
ttggaaggccaatatgacgtgcttgtcacaacgacgattattgaaacaggcgttgatatt
ccaaatgtgaatacgctgatcgtctatgatgcggaccgcatgggattatcgcaattgtat
cagctgcgcggtcgcgtcggacgttctaatcgcgttgcatacgcatatttcacataccga
aaagataaagtgctcaatgaagctgctgagaaacgtttacaagcaatcaaagaatttacc
gaacttggctcagggtttaaaattgctatgcgcgacttgtcgattcgcggcgccggaaat
atattaggcgctgaacagcacggatttatcgattccgtcggctttgatttatattcgcaa
atgctgaaagaagccatcgaaaaacgaaaaggcgtcaaacaagaagaagcaaagcatgaa
ataacgatagatttagaagtcgatgcttatattccagacacgtatatttctgacgggttg
caaaaaattgatatgtacaagcgttttaaagcggtagagacgatggaagacgtcgaaatg
ttgcgtgaagaaatgcttgaccgctttggtgaatatccggatgaagttgcttatttattc
caaattgccgaaattaaagtgtatgcgaaacaaacaggggtagaagtgattaaacagcag
aaacagcaagtcgacatcttatttgctgagaacgcctccaaagaagtagaaattcaacgc
ttatcgaaaatcggcgggcaatatggccgtttattcggattcggcatggacggttccaag
ctgaaaattgttttatacattaaagacttgaagccgcaagaatggctgatgattttatat
gaaacgttaaaagagctttccggcgttaaagatgaaaaatcgattatcgcatga
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