Parageobacillus thermoglucosidasius C56-YS93: Geoth_0123
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Entry
Geoth_0123 CDS
T01531
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gth
Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Geoth_0123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gth03021
]
Geoth_0123
03400 DNA repair and recombination proteins [BR:
gth03400
]
Geoth_0123
Enzymes [BR:
gth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Geoth_0123
Transcription machinery [BR:
gth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Geoth_0123
DNA repair and recombination proteins [BR:
gth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Geoth_0123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEH46183
LinkDB
All DBs
Position
124154..127753
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLEKEVATLKEELKTAQGQRRARIIKRLEVLEAFRNSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAVH
AGSLKNETFTEEQNNKLLITTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGV
NVKEEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILEEAQTKVDTVLKQFRRGLITDEERYERVISIWSAAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGTEVIVKLE
ERLVGRYAQKTVRHPETGEILVRKDEMITEDIANAIVKAGIKEVWIRSAFTCNTRHGVCK
KCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGIVTSISETRDRQYEIVVKGEVETRSYIAPYNARLKVEEGQQVER
GQELTEGSIDPKQLLKVRDVTSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRI
IDAGDTDVLPGTLLDVHQFTDVNEKALLEGKRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRKVKPVVKKEENEDAVTSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgttaataaatttgaatacatgaaaatcggactcgcttcgccggaaaaaatt
cgttcttggtcatatggtgaagtaaaaaaaccggaaacgattaactatcgcacattgaaa
ccggaaaaagacgggttgttttgtgaacgtattttcggcccgacaaaagattgggaatgt
cattgtggaaaatataagcgcgtacgttacaaaggtgttgtctgtgatcgttgcggtgtc
gaagtaactcgctcgaaagtccgtcgcgaacggatgggacatattgaactagcagctcct
gtttcacatatttggtatttcaaagggattccgagccgcatggggcttgttttggacatg
tcgccgcgcgcgttagaagaggtcatttatttcgcttcatatgttgtgactgatccaggc
gatacaccgcttgagaaaaaacaattgctttcggaaaaagaataccgcgcgtatcgcgaa
aaatacgggcaatcattccaagcttccatgggtgcggaagccattaaaaagcttcttcaa
gatattgatttagaaaaagaagtggcaacgctcaaggaagaattaaaaacggcgcaagga
cagcggcgtgcccgaattattaaacggttggaagtgttagaagcgttccgtaattcagga
aacgatcctgcttggatggtgcttgacgtgcttccagtcatcccgcctgaattgcggccg
atggtgcaattagatggaggacgttttgcgacatctgacctcaatgacttgtatcgccgc
gttattaaccggaataaccggttaaaacggctgctggatcttggtgcgccaagcattatt
gtgcaaaacgaaaaacggatgctccaagaggcggtcgatgcgctcattgacaacggtcgc
cgcggccgtccggtaacgggacctgggaaccgtccgcttaaatcgctgtcccatatgtta
aaaggaaagcaaggccgtttccggcagaacttgcttggtaaacgtgtggattattcaggg
cggtcggttattgtcgtcggtccgaacttgaaaatgtatcaatgcggtttgccaaaagaa
atggcgcttgagctctttaaaccatttgtgatgaaagagctggttgaacgcgggctcgcc
cataacattaaaagcgcaaaacggaaaatcgaacgcgttcatccggaagtatgggatgta
ttagaggacgtcattaaagaacatcctgtcttgctcaaccgtgcgccaacgcttcaccgc
ttgggtattcaagcgttcgagccaacgcttgtcgaaggacgcgccatccgtttgcatccg
cttgtatgtacggcatataacgctgactttgacggagaccaaatggcggtgcacgttcca
ttatccgcggaagcgcaggcggaagcccgcttgctcatgctggctgcacaaaacattttg
aacccgaaagacggaaaaccggttgttactccttcgcaagacatggttttaggtaactac
tatttaacgatggaacgcgaaggggcgatcggtgaaggaatggtatttaaagatacggat
gaagcgctgctcgcgtaccataacggttatgtccatctgcactcgcggattgccgttcat
gctggctcattgaaaaatgaaacatttacagaagaacagaataacaaactgcttattaca
acagttggaaaactcattttcaatgaaattttgccaaactcgttcccatatattaacgag
ccgacaaccgaaaatatcgaagggcggacaccagacaaatatttccttgataaaggcgtg
aatgtcaaagaagaaattcgcaagcgcgaactcgttccgccatttaagaaaaaagtgctt
ggacaaattatcgctgaagtatttaagcggttcaaaattacggaaacatcgaaaatgctg
gaccgcatgaaagatttaggtttccaatattcaacaaaagccggcattacgattggtgtt
gccgacattgtcgtgctgccagaaaaacaagaaattcttgaagaagcgcagacgaaagta
gatacagttttaaaacaattccgccgcggtttaattaccgacgaagagcgttatgaacgg
gttatttcgatttggagcgcggcgaaagataaaattcaggacagattgatgaaatcgttg
gataaacgcaacccaatctttatgatgagcgattctggagcccgcggtaacgcgtcgaac
tttacgcagcttgccggaatgcgcggtctgatggcgaacccggcaggacgcatcatcgag
ttgccgatcaaatcttcgttccgtgaaggattaaccgtattggagtactttatttccaca
cacggggcacgcaaagggcttgctgatactgcgttgaaaacagcggactctggttatctc
acaagacgtcttgttgacgtggcgcaagatgtgattgttcgcgaagaagattgcggcacg
gaccgcggcattcttgcaagagcattgacggatggcacggaagtcatcgtgaaactggaa
gaacgtcttgtcggccgttacgcgcaaaaaacggtgagacatccagaaacgggtgaaata
ctcgttcgcaaagatgagatgatcaccgaagacattgcgaacgcgatcgtgaaagccggc
attaaagaagtatggatccgctctgcctttacatgcaatacgcggcacggtgtatgtaaa
aaatgttacggccgcaacttggcaaccggtgcggaagtggaagtcggcgaagcagtcggc
atcattgctgcgcaatcgatcggcgagccgggaacacagctgacgatgcgtacattccac
acaggcggtgttgctggcgacgacattacccaaggtttgccgcgcgttcaagagctgttt
gaagcgcgcaatccgaaagggcaagcggtgatttcagaaattgacggaatcgtcacatcg
attagcgaaacgcgcgatcgccaatatgaaatcgtcgtaaaaggcgaagtggaaacgcgc
tcttatatcgccccttacaacgcaagattaaaagtagaagaagggcagcaagtagagcgc
gggcaagaactgacagaaggatcgattgacccgaaacaattattaaaagtaagggatgtc
acatccgttcaagaatacttattgcgcgaagtgcaaaaagtatacagaatgcaaggggta
gaaattagcgacaaacatatcgaagtaatggtccgacaaatgcttcgcaaagtgcgcatc
attgacgcgggagatacagacgtcttgcctggcacgttgttagatgtgcatcaatttaca
gatgtgaacgaaaaagcgcttttggaaggaaaacgtccggcgacagctcgtccggtattg
ctcggtattacaaaagcatcgcttgagacagattccttcttgtccgctgcatcattccaa
gaaacaacgcgcgttttaacagatgcggcgatcaaaggaaaacgagatgaattgcttggc
ttaaaagaaaacgtcattatcggcaagcttgttccggcaggaacgggaatggctcgctac
cgcaaagtgaagccggtagtgaagaaagaagaaaatgaagatgcggttacttcgaaataa
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integrated database retrieval system
