Gardnerella vaginalis ATCC 14019: HMPREF0421_20100
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Entry
HMPREF0421_20100 CDS
T01344
Name
(GenBank) Beta galactosidase small chain
KO
K01190
beta-galactosidase [EC:
3.2.1.23
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg00052
Galactose metabolism
gvg00511
Other glycan degradation
gvg00600
Sphingolipid metabolism
gvg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
HMPREF0421_20100
09103 Lipid metabolism
00600 Sphingolipid metabolism
HMPREF0421_20100
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
HMPREF0421_20100
Enzymes [BR:
gvg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
HMPREF0421_20100
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_2_C
Bgal_small_N
Glyco_hydro_2_N
LacZ_4
Glyco_hydro_2
Glyco_hydro_2_N2
Motif
Other DBs
NCBI-ProteinID:
ADP38186
UniProt:
E3D7F5
LinkDB
All DBs
Position
107324..110476
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AA seq
1050 aa
AA seq
DB search
MARPSIYNDNTCWDEPTYTCISSNYAKTDWITNPQVFAVNTISAHSHHHYTINGTTPIQS
LNGTWEVKLLSSRIFNPENLDENIKNYEDSSYKTISVPSHLQMNGLLKPQYVNVQYPWDG
HEDVQAPNVPSLNHVAIYKKHFVLQNNLKQILNEEGKATITFHGAQTAIYVWINGKFVGY
GEDSFTPSEFDITQFLKDSENSIVVACYEFSSASWLEDQDYWRLHGIFRSVELCAHPSTH
VSNLHVDADYSNDTNTGKLAFRANIEGDNLKDITLHAYITNHKYSNDKFTNNNEILWDCT
LPVQTITELKQTTIPKALPWSAEYPALYDLHIDVVSKESNIIEHVVQPIGFRHFDIENGI
MRLNGKRIIFKGVNRHEFNCDRGRAITYDDMVSDVLFCKQHNINAVRTSHYPNQDVWYDL
CDEYGLYLIDETNLETHGTWSDGRGNITPECVIPGSRDEWRAACVNRVDNMIQRDYNHPC
VLIWSLGNESFGGDVFRSMYHHARALDAHRPVHYEGQTMDKSWRDTSDIETRMYAHADEI
EKYVSNNPDKPYISCEYMHAMGNSLGNMNEYVALEKYPHYQGGFIWDFIDQAIKQTLPDG
STHLAYGGDFDDRPTDYEFCGNGLLFADRKPSPKAIEAKQQYANIRLYPNENGVRIENHQ
LFMNTENYVFLAKLRVDGKIMWSQPYTCNVEPENDFEMPIEWPLEQYQSSGEEITFEVSC
TLAKSTCWAQKGYELSFGQYTILTKNSESQAKQISDARLHKDGTVTIGRWNAGTRNSSIE
TLFSYSQCGLISYRLGEREFVIKRPLITTFRALTDNDRGCKHGFERAQWSVAGKYAKCVD
QTAEKLDDNTLQIVYKYELANADHTTVNLTYVSKTSGDLHIELNYVPSGKDLPSIPAFGL
EWMLPIEYRNLEFYGIGPVETYADRISAGRLGIWKTNAFDDFMPYLVPQETGNHEKVRWA
NVTDDSGHGMRIQRHNSTSNFCVSLLPYSSTMIEEAQHISDLGDSKHMFLRILAAQMGVG
GDDSWGSPVHPEYHLPANKPYSLNVDLQLF
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggctaggccatctatttataatgacaatacttgttgggatgagccaacatatacttgc
atatcttccaactatgcaaaaactgattggataacaaatcctcaggtttttgccgttaac
actatttcagcgcattcacatcatcattacacaatcaacggtaccacaccaatacagtca
cttaatggaacgtgggaagtaaagctactttcttcccgcatattcaaccctgaaaactta
gatgagaatattaaaaattacgaagattcttcatataaaacaatctcagttccatcacac
ttacagatgaatggtctattaaaaccgcaatacgttaacgttcagtacccttgggatggc
catgaggacgttcaagcaccaaatgttccttccttaaatcacgtggcaatttataagaaa
cattttgttttacaaaataatcttaaacagattttgaacgaagaaggtaaagctactatt
accttccatggagcacaaacagctatttacgtatggattaacggaaagtttgttggatat
ggtgaagactcttttacgccgagcgaatttgatattactcaatttttaaaagattctgaa
aatagtattgttgtagcgtgctacgaattttctagcgcatcatggctagaggatcaagat
tattggagactacacggcattttccgttccgttgaactgtgtgcacatccttccacccat
gtatcaaatcttcatgttgatgcagattatagcaatgatacaaatactgggaaactcgca
ttcagagcaaacattgaaggagacaatttaaaagatattacactacacgcttacattaca
aatcataaatacagcaacgataaattcacaaataataatgagattttgtgggactgcacg
ctacctgtacaaacgattactgaactaaaacagactactattcctaaagcactaccttgg
agtgctgaataccctgcgctatacgacttacatattgatgttgtaagcaaagaatcgaat
attattgaacatgtagtgcagccgattggttttagacattttgatattgaaaacggcata
atgagattaaacggaaaacgcattattttcaaaggcgtaaaccgtcatgaatttaattgc
gacagaggccgagcaataacatatgatgacatggtttccgatgtgcttttttgtaagcaa
cacaatataaacgctgtgagaacttctcactatcctaatcaagatgtttggtacgattta
tgcgacgaatatgggttatatcttattgacgaaactaatctagaaacacatggaacgtgg
tcagatgggcgcggaaacataactccagaatgcgttattcctgggagtagagatgaatgg
cgtgccgcgtgcgtaaatcgcgtcgataacatgattcaacgcgattacaatcacccatgt
gtgctgatttggtctctcggaaacgaatcctttggtggagacgtatttcgttctatgtat
catcatgctcgtgctctagatgcacatcgcccagtgcattacgaaggtcagactatggat
aagtcttggcgcgatactagcgacattgaaacacgcatgtatgctcacgcagatgaaata
gaaaaatacgtgtcaaacaacccagataaaccttatatatcttgcgaatacatgcatgct
atggggaattcattgggaaacatgaacgagtatgttgctcttgaaaagtatccgcattac
caaggtggttttatttgggatttcatcgatcaggcaataaaacaaaccctaccagacgga
agcacgcatttggcatatggtggcgactttgatgatcgacctaccgattatgaattctgt
ggcaacggtctattattcgcagatagaaaaccaagtcctaaggccattgaggctaaacaa
caatatgcaaatataagactatatccaaacgaaaatggtgttcgaatagaaaatcatcag
cttttcatgaatactgaaaattacgtattcttggcaaaattacgcgttgacggcaaaatt
atgtggtctcaaccatatacgtgtaatgtggaacctgaaaatgattttgaaatgcctata
gagtggccgttggaacagtatcaaagcagtggggaagaaattacttttgaagtttcgtgc
acgcttgcaaaatctacatgttgggcacaaaaaggatacgaattatcgttcggccaatac
acaatactcactaaaaattcagaatcacaagctaagcaaatatcagatgcacgattacat
aaagatggcactgttactattggacgctggaacgcaggaacacgtaactcttcaatagaa
acgcttttttcatattcacaatgtgggcttatttcataccgtcttggcgaacgagaattt
gtgattaaacgccctttgatcactacattccgagcactaacagacaatgaccgcggttgc
aaacatggttttgagcgtgctcaatggtctgtagcaggtaaatatgctaaatgcgtagat
caaacagctgagaagctcgacgacaatacgctacaaattgtatacaaatatgaacttgct
aacgcagaccatacaacagtgaatttaacatatgtgtctaaaacatcaggagatttacac
attgaactaaattatgttccttctggaaaagatttaccttccattccagcatttggattg
gaatggatgctaccaatagaatacagaaaccttgaattctacggtattggtcctgttgaa
acatatgcagaccgtatcagtgcgggacgtttagggatttggaaaacaaatgcttttgac
gattttatgccatatcttgttccacaagaaactggcaatcatgaaaaagtaagatgggca
aacgtaacagacgattctgggcatggcatgcgtattcagcggcataatagtactagcaac
ttctgcgtaagtttacttccatacagcagcactatgatagaggaagcacaacatataagt
gatttaggtgactcaaaacatatgttcttgcgaattcttgcagcacaaatgggagtcggc
ggcgatgattcgtggggctcgcctgtgcatcccgaatatcatttgcctgccaataaacca
tattctctaaatgtggatttgcaattattctaa
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