Gardnerella vaginalis ATCC 14019: HMPREF0421_20654
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Entry
HMPREF0421_20654 CDS
T01344
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0421_20654 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_20654 (ung)
Enzymes [BR:
gvg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
HMPREF0421_20654 (ung)
DNA repair and recombination proteins [BR:
gvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HMPREF0421_20654 (ung)
Prokaryotic type
HMPREF0421_20654 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
PTHB1_CtH
HlyD_2
Motif
Other DBs
NCBI-ProteinID:
ADP38736
UniProt:
E3D9J2
LinkDB
All DBs
Position
complement(809169..809972)
Genome browser
AA seq
267 aa
AA seq
DB search
MPRTKHKINGNIKNYYYLLHIFVIYVLKLLTMEIKQRKSLHDLIDPDWADALEPVEPQVH
KMGDFLRDELSNGRRFLPESHNILRAFTIPFKEIKVLIVGQDPYPTPGHPVGLSFCVAPN
VKPLPKSLINIYKELVSDLNVPMPKNGDLTPWTQKGVMLLNRCLSVEVGRPNSHQGKGWE
EITDAAITALNNRVDNNGKHIPLVAILWGRNAQSLAPLLTNAIIIQSPHPSPLSASRGFF
GSRPFSRANQALISLGSTPIDWTLPSE
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcacaaaacataagataaatggaaatataaaaaattattattatttgctgcac
atatttgtcatttatgttttaaagttattaaccatggagattaaacagcgaaagtcttta
cacgatttaatagacccagattgggcagacgctcttgaaccagtagaaccacaagttcac
aaaatgggagactttttaagagatgaactatctaacgggaggcgattcctgccagaaagt
cacaatattctcagagcttttacaataccttttaaagaaataaaggttcttattgttggt
caagacccatatcctactccaggtcatcctgtaggacttagtttctgcgttgctccaaac
gttaaaccattacctaaaagtcttattaatatttataaagaattagttagtgatttaaat
gtaccaatgccaaagaatggtgacttaacaccgtggactcaaaaaggcgttatgctacta
aacaggtgccttagcgttgaagtaggtagacctaatagtcatcagggaaagggctgggaa
gaaattaccgatgcagctattaccgcattgaataaccgtgtagataataacggcaagcat
attcctctggttgcaattttgtggggaagaaatgctcaaagtcttgctcctcttcttaca
aacgcaatcattattcaatcccctcacccaagtcctctttctgcctctagaggattcttt
ggttctcgtccattttcaagagcaaaccaggctttaatatcgttaggatcaacaccaata
gattggactctccctagcgaatag
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