Gardnerella vaginalis HMP9231: HMPREF9231_0330
Help
Entry
HMPREF9231_0330 CDS
T01939
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9231_0330 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gvh03021
]
HMPREF9231_0330 (rpoB)
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0330 (rpoB)
Enzymes [BR:
gvh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9231_0330 (rpoB)
Transcription machinery [BR:
gvh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9231_0330 (rpoB)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9231_0330 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEF31410
LinkDB
All DBs
Position
388133..391699
Genome browser
AA seq
1188 aa
AA seq
DB search
MAAEQATTNTTKVIARADEHSIKLHKASDRVNFGSICEPIDVPYLLGVQTDSFDWLIGSE
RWKKRVEEDEANGTHTVPHVSGLEEVFQEISPIENFAETMSLTFSDPYFEEPRHTVLECK
EKDYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSP
GVYFDRTQDRTSDKDVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRKQSAIVFLMAIGM
TKPEIAEAFEGYPLVLDALEKEPIDTQNDALTDLYRKIRPADTATPDAGRNLLESFYFNT
KRYDLARVGRYKINRKLGLEADYNDRSLNREDIIATIKYLVTLHSGEKTFPGKRDGEDVQ
LRVDVDDIDHFGNRRIRQVGELVQNQIRTGLSRMERVVRERMTTQDAEAITPQSLINIRP
VNATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGR
MCPIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTNEVEYMTADREAEHVIA
QANQELDENGNFVGTQALARVDEEEAVDVPVSTVDYMDVSPRQMVSLGASLIPFLEHDEG
HRALMGTNMQRQAVPLIKSERPLVGTGSEWRAAVDSGDVILSEKPGVVTYVSADIIRVMN
DDGTQSSYKLSKFQRSNQTTCYNQVPLIKDGERVEAGTVLADGPATDKGELALGKNLLVA
FMPWNGYNYEDAIIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAIA
NLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHG
ETGTVIAVKEITREDAEDDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRI
LPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDINLDPDLEADWKK
YVPEGAEHGDPCTPVATPVFDGVRPETLKGLLSTTLADRDGNKLVGSDGKATLFDGRTGE
PFPKPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEV
LNSEGVAIDMKDEDDDPVSSSEDLGFNIGARPDSSAKEDQVIQEPEYQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgaacaagctacgacgaacaccaccaaagtcatcgcgcgtgccgacgagcac
agcattaaattgcataaagcgtcggatcgtgtgaatttcggctccatttgtgagccaatc
gatgtgccatacctcctcggtgtgcaaaccgacagctttgactggctgatcggctccgag
cgttggaagaagcgcgtcgaagaagatgaggcaaatggcactcacactgtgcctcatgtc
tctggtttagaagaagtgttccaagagatttctccaatcgagaattttgctgagacaatg
agcctcacattctcggatccatattttgaagagccacgtcacactgtgcttgagtgcaaa
gagaaggattacacatattccgctcctttgtatgtaaacgcagagtttgaaaacggcgaa
actggcgagattaagagccagactgtgtttatgggtgatttcccgctgcaaacaccacac
ggaacattcattattggcggcactgagcgagtaatcgtgtcccagcttgtgcgttcccca
ggcgtgtattttgaccgcacgcaagatcgcacttccgacaaagacgtttttggcgcaaaa
atcattccaagtcgcggagcgtggcttgagtttgagattgataagcgcgatgttcttggc
gtgcgcgtagatcgcaagcgtaagcagtctgcaatcgtgttcttgatggcaattggcatg
actaagccagaaattgccgaggcattcgaagggtatcctcttgttctcgacgctctagaa
aaagagccaatcgacactcaaaatgatgctcttacagacttgtatcgcaagattcgccca
gcagataccgcaactccagacgcgggtcgcaatttgcttgaatccttctacttcaacaca
aagcgctacgatttggcgcgcgttggtcgctacaagatcaatcgcaagcttggtttggaa
gcggattacaacgatcgcagcttgaatcgcgaagacataatcgccacaatcaagtatttg
gttactttgcactcgggcgaaaagaccttcccaggcaagcgcgatggcgaagatgtgcaa
ttgcgtgtagacgtggacgatattgatcactttggaaaccgtcgaatccgtcaggttggc
gagcttgtacagaatcagattcgtactggcttaagccgtatggagcgcgttgtgcgcgag
cgcatgaccacgcaagatgctgaggcgattacaccacagtcgttgattaacattcgacca
gttaacgctacgattaaggagttcttcggaacttctcagcttagccagtttatggatcag
aacaatcctttggcaggcgttacaaacaagcgtcgtctttcggctcttggtcctggtggt
ctttctagagaccgcgcatctatggaagttcgagacgtgcacccatcccactttggtcgt
atgtgcccaatcgaatccccagaaggtccaaacatcggtcttatcggttcgcttgcaacc
tttggtcgcatcaacccattcggctttattgaaacaccttatcgtaaggttgttaacggt
catgtgactaacgaagtcgaatatatgaccgcagatcgcgaagccgagcacgttattgct
caggcaaatcaggaactcgatgaaaatggcaactttgttggcactcaggcacttgctcgt
gttgacgaagaagaagcagtcgatgttcctgtaagcactgttgactacatggatgtttcc
ccacgacagatggtttcccttggcgcaagcttgattccattcttggagcacgatgaaggt
caccgtgctttgatgggtaccaacatgcagcgtcaggctgtgccgcttattaagtcggag
cgtccacttgttggtacgggttccgaatggcgtgctgcagttgattctggagacgtgatt
ctttccgaaaagccaggcgttgtaacctacgtttctgcagatattattcgcgttatgaac
gacgatggaactcagtccagctacaagctttctaagttccagcgttctaaccagactact
tgctacaaccaggtgccacttattaaagatggcgagcgtgttgaagctggtacagttttg
gcagacggtcctgcaacagacaagggtgagcttgcactcggcaagaatttgctcgttgcg
tttatgccttggaatggttacaactacgaggatgctattattatttcccagcgtcttgtg
caagacgatacgctttcttcgattcacattgaagagtacgaaatcgatgctcgtgaaacc
aagcttggtgccgaagagattactcgcgaccttccaaacgttggcgaagacgctattgca
aacctcgacgagcgcggtattattcgcattggtgccgaggtggaagctggcgacattttg
gttggtaaggtaacgcctaagggcgagactgagcttactccagaagagcgcttgcttcgt
gcaatctttggcgaaaagagccgtgaagttcgagacacttctttgcgcgtgccacacggc
gaaactggtactgtgattgctgttaaggaaatcactcgtgaagacgctgaagacgatggc
gatgagcttccaaatggcgtaaaccagatgattcgcgtgtacattgctcagcatcgtaag
attacgcagggcgataagctttctggtcgccacggcaacaagggtgttatttcccgcatt
ttgccagaagaggatatgccattcttggctgatggtactccagtagacattatgcttaac
ccgttgggtgtgccttctcgaatgaacttgggtcaggtgctcgagcttcacttgggttgg
attgctcacgctggttgggatattaatttggatccagaccttgaggctgattggaagaag
tatgtgccagaaggcgctgagcatggcgatccatgcactcctgttgcaactccagtgttc
gacggcgtgcgcccagaaaccttgaagggtcttttgagcactacgcttgcagaccgcgat
ggcaataagcttgttggttccgacggtaaggcaacattgtttgacggccgcactggtgag
ccattccctaagccaatttctgttggctacatgtacatcttgaagctgcatcacttggtt
gatgataagattcacgctcgttccactggtccttactctatgattacccagcagccgttg
ggtggtaaggcgcagttcggcggccagcgcttcggcgaaatggaagtgtgggcgcttgag
gcttatggcgctgcttacacattgcacgaaatgatgaccacaaagtctgatgacgttgac
ggccgcgtgcgtgtgtatggcgctattgtcaagggcgataaccttccaccagctggtatt
cctgagtccttcaaggtgttgctcaaggaaatgcagtctctctccttgaatgttgaggtg
cttaactccgaaggagtggcaattgacatgaaggatgaggatgatgatccggtgtcgtct
tctgaagatttgggcttcaacattggtgcacgaccagattcgtccgccaaggaagatcaa
gttattcaagaacctgaataccagtga
DBGET
integrated database retrieval system
