Geobacillus sp. Y412MC61: GYMC61_3175
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Entry
GYMC61_3175 CDS
T01101
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
gyc
Geobacillus sp. Y412MC61
Pathway
gyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYMC61_3175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gyc03400
]
GYMC61_3175
DNA repair and recombination proteins [BR:
gyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYMC61_3175
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GYMC61_3175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_22
AAA_19
Flavi_DEAD
UB2H
TrwB_AAD_bind
AAA_7
AAA_25
AAA_30
AAA
HTH_22
Motif
Other DBs
NCBI-ProteinID:
ACX79730
LinkDB
All DBs
Position
complement(3224670..3226646)
Genome browser
AA seq
658 aa
AA seq
DB search
MEGRFQLVSPYEPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFTISNVIAQVNKPT
LVIAHNKTLAGQLYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDAKINDEID
KLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQ
YDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREH
VAIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREM
GFCSGIENYSRHLALRPPGSTPYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQV
LVDHGFRLPSALDNRPLTFEEFEQKINQIIYISATPGPYELEHSPGVVEQIIRPTGLLDP
TIDVRPTKGQIDDLIGEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATY
AAEETEMYEAKPAAAMTKQEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKAEG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtggagggccgttttcaattagtgtcgccatacgaaccgcaaggcgatcagccgcaggcg
atcgccaagctcgttgacggtttgcggcttggggtgaagcatcaaacgctgcttggggcg
acggggacgggcaaaacgtttacgatctcgaacgtgatcgcccaagtcaacaaaccgacg
cttgtcatcgcccacaacaaaacgctcgctggccaattgtacagcgagctgaaagagttt
ttcccgcacaacgccgtcgaatattttgtcagctattacgattactatcagccggaagcg
tatgtgccgcagacggatacgtacattgaaaaagacgcgaaaatcaacgatgaaatcgac
aaattgcggcactcggcgacatcagccttgtttgagcgtcgggacgtgattatcgttgcg
agcgtgtcgtgcatttacggtttagggtcgccggaagaatatcgggagctcgtcgtctcg
ctgcgcgttgggatggaaatcgagcgcaatgcgttgcttcggcggctcgttgacatccaa
tacgaccgcaatgacatcgattttcgccgcggcacgttccgcgtccgcggcgatgttgtc
gaaattttccccgcgtcgcgcgatgaacattgcattcgcgtcgaatttttcggcgatgaa
atcgagcgcatccgcgaggtggacgccttaaccggcgaggtgctcggcgagcgcgagcat
gtcgccattttcccggcgtcgcacttcgtgacgcgcgaggagaaaatgcggctcgccatt
caaaacatcgaacaagagcttgaggagcggcttgccgaactgcgcgcgcaaggaaagctc
ttagaggcgcagcggcttgagcagcggacgcgctatgaccttgaaatgatgcgcgagatg
ggcttttgttcaggcatcgaaaactactcgcgccatttggcgctgcggccgccgggctca
acgccgtatacattgcttgactattttccggacgattttttgatcatcgttgatgagtcg
cacgtcaccttgccgcagctgcgcggcatgtacaacggtgaccgggcgcgcaagcaagtg
cttgtcgaccacggcttccgtctgccgtcggcgcttgacaaccggccgctcacgtttgaa
gagttcgagcaaaaaatcaatcaaattatttacatctcggcgacgccagggccgtacgag
ctcgagcacagcccgggcgttgtcgaacaaatcatccgcccgaccgggcttctcgaccca
acgattgacgtccgtccgacgaaagggcaaatcgacgatttgatcggcgaaattcacgag
cgcgtcgagcggaacgaacggacgttggtgacgacgctgacgaaaaagatggcggaagat
ttgaccgattatttgaaagaagcggggatcaaggtggcgtatttgcattcggaaattaag
acgctcgagcgcattgaaatcatccgcgatttgcggctcggcaaatacgatgtactggtc
ggcatcaacttgcttcgcgaagggctcgacatcccagaagtgtcgcttgtcgccattttg
gacgccgacaaagaagggtttttgcgctcggagcgctcgctcatccagacgatcggccgg
gcggcgcgcaacgcgaacggccatgtgatcatgtacgccgatacgatcacgaaatcgatg
gaaatcgccattcaagagacgaagcggcgccgcgcgattcaagaagagtacaaccgaaag
cacggcatcgtgccgcgcacggtgaaaaaggagattcgcgacgtcatccgcgcgacgtat
gcggcggaagagacggagatgtacgaggcaaagccggcggcagcgatgacgaaacaagag
cgggaagagctgattcgaaagctcgaagcggaaatgaaagaggcggccaaagcgctcgac
ttcgagcgggccgcccagctgcgcgatatcattttcgaattgaaagcggaagggtga
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