Paenibacillus sp. Y412MC10: GYMC10_1570
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Entry
GYMC10_1570 CDS
T01100
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gym
Paenibacillus sp. Y412MC10
Pathway
gym03410
Base excision repair
gym03430
Mismatch repair
gym03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GYMC10_1570
03430 Mismatch repair
GYMC10_1570
03440 Homologous recombination
GYMC10_1570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gym03400
]
GYMC10_1570
DNA repair and recombination proteins [BR:
gym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GYMC10_1570
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GYMC10_1570
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GYMC10_1570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
ssDNA-exonuc_C
DHH
DHHA1
DUF3376
Motif
Other DBs
NCBI-ProteinID:
ACX63853
UniProt:
D3EKT3
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Position
1856764..1859166
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AA seq
800 aa
AA seq
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MLYSKYEWRIREAASTITERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTFELTHDP
YLMQGMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRYLGASYDIYIPHRSN
EGYGLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPEVLPEAY
ALINPKIPTCPYPFKGLAGVGVAYKLAQALVGDPPEEWLQIVSIGTIADLMPLTGENRVL
VKHGIESMRRTRYEGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASGRLDHAGRAVTLLT
TEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWRGQEIPPVIVLAGEGWNVGV
VGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLSCKDVMDHFGGHPSA
AGMSLHRDRLAAFEQGLHRYAEDALEAEHLIAVCEADLEASLSEVSVPILEQMEQLGPFG
MANAVPKIVFRDVVIKDVRKIGKEGKHLKLRLQQKREVIDAISFGWGHLADILPVGSVVD
VLGELSVNEWNGSRKVQLMIQDICAPYQQVFDYRGIKEPIREIQRWRAELEPHLRCPAVR
SAVVYAKDSHPEIKSQLYDMCLWVYDRNAGIVPDNEIAASGSQEDISVLFVLDVPETAEQ
LAAFMSAFHSVPNIFMLHPTRNLRERLQIPDREQFKKLYVSLAGLTSAPMPEKEVVARLQ
KQTSLSSRMLVKVLDVFEELAFIQRDQGQITFVPKPEKKPLDASRHFRELSDLADMEQHL
LHAGTEQLTQWMTSRTKGVS
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
gtgctgtattccaaatatgaatggagaatacgagaggcagcgtcaacgatcaccgaacgg
ctggcccatgatttgtcgctgccacccatcgtggcttcactcatggcgtcccgggggata
caatcagccgaggatggccgggaatttttatatggaacgtttgagctgacgcacgaccct
tatctcatgcagggaatgcgggaggccgtgccgcgcatccgcaaagcgctggaggatcgg
gagcatattcttatctacggcgattatgacgcggacggggtttccagcacatcattgatg
attcatctgatgcgttatttgggagcatcttatgatatttatatccctcaccgatccaat
gaaggttatggcttacataatcatgcgctggattgggcccatcagcaaggggtcagtctg
gtgatcactgtagataccgggattagtgcggtcgagcaaatcgcgtatgccaacagcctt
ggcatcgacgtcatcgtcaccgaccatcatgagccgcctgaggtgctgcctgaggcatat
gcattgatcaatccgaagatcccgacatgcccgtatccctttaaggggctggccggcgta
ggcgtggcttacaaattggcacaggctctcgtgggtgacccgccggaggaatggctccag
atcgtttcgatcggaacgatcgctgacttgatgccgctcacgggggagaatcgggtgctt
gtgaagcacggtatcgaatcgatgcgaagaacgcggtatgaaggcatccgcagcttgctt
gaagtatcgggaattcatgtagagcaggtgacggccgttaacgtggccttctccatggca
ccacggattaacgccagcggccgcttggaccatgcaggccgtgccgttacgctgcttaca
acggagcacagggaagaggcagagcgccttgcttgggagctggacgggctgaacaaggat
cggcagcaagtggtcgaaaacatcgtccaggaagcgctggggatggttcaaaaccgctgg
agagggcaggagatcccgcctgttatcgtactggcgggcgagggctggaatgtcggcgtg
gtcggcatcgtggcttccaaaatcctggagcgcttttaccgccccgttgtaattctcggg
attgatcccgaaacgggaaactgtaaaggctctgcccgttcgattccgggattcgatatc
tatgcggctttgctttcttgcaaagacgtcatggaccactttggcggccatccttccgca
gccggcatgagcctccatcgagaccgcttggcggcattcgaacagggacttcatcgatat
gcggaggatgcgctcgaagcagagcatctgattgccgtttgcgaagcggacctggaagcc
agtttgtcggaggtatccgtacccattctggaacagatggaacagttaggcccgttcggc
atggcgaatgccgtaccgaagatcgtttttcgggacgttgtcatcaaggacgtccgcaag
atcggcaaagaagggaaacatctgaagcttcgtttgcagcaaaagcgggaggttatcgat
gcgatctcattcggctggggccatcttgccgatattctgccggtgggttcggttgtggat
gtgcttggcgagctttccgtcaatgaatggaacgggagccgtaaagtgcagctcatgatt
caggatatctgcgccccttatcagcaggtgtttgattaccgcgggatcaaagaaccgatc
cgggagatccagaggtggagagctgaactggagccgcatctgcggtgcccggctgtccgt
tccgcggtggtgtacgcaaaagattcacatccggaaataaaaagtcaattgtatgatatg
tgcctttgggtatatgataggaatgctggcatcgtgccggataatgaaatcgccgcgagc
ggcagtcaagaagacatttccgttttgttcgtactggatgtaccggagacggctgagcag
ctcgctgcattcatgtcagccttccattccgttcccaatatatttatgttacatccgacc
cggaacctgcgcgaacggctgcaaattccggaccgggaacagtttaagaagctgtacgta
tcactcgctggactgacgtccgctcccatgccggaaaaagaggtcgtagcacgtctacag
aagcagacttcgttgtcatcgcgcatgctggtcaaagtactggatgtctttgaagaattg
gcattcattcagcgtgaccagggacaaattacctttgtaccgaagccggagaaaaaaccg
ctcgacgcatcccgtcacttccgggaattaagcgacttggcggatatggagcagcatctg
ctgcatgccggcaccgaacagttaacccagtggatgacgtcccgtacaaaaggcgtatct
taa
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