Halomonas sp. SF2003: C8233_11120
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Entry
C8233_11120 CDS
T05423
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
haf
Halomonas sp. SF2003
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haf03032
]
C8233_11120 (gyrB)
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_11120 (gyrB)
Enzymes [BR:
haf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
C8233_11120 (gyrB)
DNA replication proteins [BR:
haf03032
]
Prokaryotic type
DNA Topoisomerases
C8233_11120 (gyrB)
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C8233_11120 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
UFD1
Motif
Other DBs
NCBI-ProteinID:
AVV34123
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Position
complement(2683336..2685753)
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AA seq
805 aa
AA seq
DB search
MSEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEV
RVVIHADESVSVSDNGRGVPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSEELKLTIWRQGNVHEQIYRHGEPQSPLGIVGQTEKTGTLVRFKPSPLTFANI
EFHYEILAKRLRELSFLNSGVAIRLIDERSGKEELFHYEGGLKAFVDHINTNKAPLNPVF
HFEMEREDGIAVEVAMQWNEGFAENIFCYTNNIPQRDGGTHLAGFRAALTRTLNSYIEAE
GLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLFSEY
LIEKPNEAKGIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSLSEL
YLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGR
EEFNPDKLRYHSVIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHIFIAQPPLYKIKRG
KHEQYLKDEQALQDYLTATALDGGKLHVNADAPGIAGAQLEALVNQYRGVMKRIDRLARV
YPSAVLRKIVHAPHLDEAALADQSQVQGWIDGLQKEMDDLIAYEGGPHYSFTLSHDGERN
LYLPAVTLTAHGVSSDYLWDVDFFKSADYREMSELGNMLEGLLEVGSYVSRGERKKEVVT
FYEALDWLMKEAARGFSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVEDAIGADQMFN
TLMGDEVEPRRDFIERFALVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacaggcttacgactcatcaagcatcaaggtcctcaagggcctggatgccgta
cgcaagcgccccggcatgtatatcggtgataccgatgacggcacggggctgcatcatatg
gtgttcgagctggtggataactccatcgacgaggcgctggccggtcactgtagcgaagtc
cgggtcgttattcatgccgacgagtcagtttccgtcagcgacaacggtcgtggtgtgccg
accgagatccatgaagaggaaggcgtcagcgcagcggaagtcatcatgaccgtgctgcac
gcaggcggtaagttcgatgacaactcctacaaggtctccggcggtctgcacggtgtgggt
gtctcggtcgtcaacgcgctatccgaagagctcaagctgaccatctggcgtcagggcaat
gtccacgagcagatctatcgccatggcgagccgcagtcgccgctgggcatcgtgggccag
accgagaagaccggtaccctggtacgcttcaagccttccccgctgacctttgccaatatc
gaattccactacgagattctggccaagcgtctgcgagagctgtccttcctgaactccggt
gtcgccatccgtctgattgacgagcgcagcggcaaggaagagctgttccattacgaaggt
ggcctcaaggcgtttgttgaccatatcaacaccaacaaggcgcccttgaatcctgtgttc
catttcgagatggagcgcgaggatggcattgccgtcgaagtggcgatgcagtggaatgaa
ggcttcgccgagaatatcttctgctacaccaacaatattcctcagcgcgatggcgggact
cacctggccggcttccgtgcggcactgacgcgtactctcaatagctatattgaggcggaa
ggtctgctcaagaaatccaaggtcggtacgaccggggacgatgcccgtgaaggactgacc
gcgatcatctcggtcaaggtaccggacccgaagttctcctcgcagaccaaggacaagctg
gtctcttccgaggtcaagacagccgtcgagcaggaaatgggccgtctgttctccgagtat
ctgatcgagaaacccaacgaagccaagggcatcgtcaacaagatgctggatgcggcgcgg
gcgcgtgaagctgcgcgcaaggcgcgtgatatgacgcgtcgcaagggcgccctggatatc
gcaggcctgccgggcaagctggctgactgtcaggagaaggacccgagcctctctgaactg
tacctggtcgagggtgattccgctggtggctctgccaagcaggggcgtgatcgtcgtacc
caggcgatcctgccgctgaagggcaagatcctcaacgtcgagaaggcgcgcttcgacaag
atgctgtcgtctgccgaggttggcacgctgatcaccgcgctgggttgcggtatcggtcgt
gaagagttcaatcccgacaagctgcgctatcactccgtcatcatcatgacggatgccgac
gtcgatggttcgcacatccgtacgttgttgctgaccttcttcttccgtcagatgccggag
ctgatcgagcgcggtcatatcttcattgcccagccgccgctctacaagatcaagcgcggc
aagcatgagcagtatctgaaggacgagcaggcgctgcaggactatctgaccgctacggcg
ctggacggcggcaagctgcatgtcaacgccgatgccccgggcatcgccggcgctcagctg
gaagcactggtcaaccagtatcgtggcgtgatgaagcgcatcgatcgtctggcgcgtgtc
tatccgtctgccgtgctgcgcaagatcgtgcacgctccgcatctggatgaggccgcactc
gcggaccagtctcaggtgcaaggctggatcgatggtctccagaaggaaatggatgacctg
attgcctatgagggtggcccgcactacagcttcactctcagccacgacggcgagcgcaat
ctctatctgccggcggtgacgctgacggcacatggtgtcagcagcgattacctgtgggat
gtcgacttcttcaagtccgccgactaccgcgagatgagtgagctgggcaacatgctggaa
ggcctgctggaagttggcagctacgtctcgcgcggtgagcgcaagaaggaagtcgtcacc
ttctacgaagccctcgactggctgatgaaggaagcggcacgtggcttcagcatccagcgc
tacaaggggctgggggagatgaacccggatcagctgtgggaaaccaccatggatccggag
tcccgtcgcatgctgcgtgtgaccgtcgaggatgcgatcggtgccgatcagatgttcaac
accctgatgggtgatgaagtcgaaccgcgccgtgacttcatcgagcgcttcgcgctggtg
gccaacctcgacgtctga
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