Hemitrygon akajei (red stingray): 140728551
Help
Entry
140728551 CDS
T11019
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
haka04040
]
140728551 (scn1laa)
Ion channels [BR:
haka04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
140728551 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
140728551
NCBI-ProteinID:
XP_072903534
LinkDB
All DBs
Position
5:185600820..185823142
Genome browser
AA seq
2002 aa
AA seq
DB search
MAQPLLAPPGPDSLVHFTRESLAAIERCIAEEKAKKPKEQHGEDAENGPKPNRDLEAGKS
LPFIYGDIPPGMVSEPLQDLDPFYRTKKTFIVLNKGKAIFRFSATPALYILSPFNPIRKL
AIKILVHSLFSMLIMCTIMTNCVFMTMHNPPDWTKNVEYTFTGIYTFESLIKILARGFCV
DHFTFLRDPWNWLDFSVIVMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCVQWPPEFNFSTSNSSFVLNDTMA
NETTNTFNFDKYVQDTKNYYFLEGSKDALLCGNGSDAGQCPEGYTCLKAGRNPNYGYTSF
DTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMA
YDEQNQATLEEAVQKEAEFQQMLEQLKRHQEAAQAAAALAAEEEDGSGRVGICEMSQSSS
EASKLSSKSAKERRNRRKKRKQTELGTEDKDEEKMHKSESEDSGRKGNGFRFSIDRNCLS
YEKKNSSPQQSLLSIRGSIFSPRRNSRSSIFSFRARTKDIGSENDFADDEHSTFEDNESR
RGSLFIPRRQGERRSSNVSQCSKSSRMLPVLSVNGKRHSTVDCNGVVSLAGGLSTPTSPV
GRLLPEVIIDKPTTDDNSTNTEAIFKKRRSGSHQVSMDFLDDAIQRQRALSVASILTNTM
EELEESRQKCPPCWNKFANSFLVWDCHPHWLKVKKIVHLIVMDPFVDLAITICIVLNTLF
MAMEHYPMTKNFENVLSYGNLVFTGIFTGEMIFKIIALDPFYYFQEGWNIFDSIIVSLSL
MELGLANVDGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKECVCKIQEECKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QSMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQVAVGRIQRGIA
YVKRNVQEFFQKAFIKTKVTEDIKPLDELHSKKDNYISDHTGVEISKDMNYQKDENCTTS
GIGSCLVKYNIDEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFTSESDLEGSKEKLA
ESSSSEGSTVDISPPGQGEQPEETPEESMEPEACFTEGCVRKFPFCYVNIEEGSGKSWWN
LRKTCYKIVEHNWFETFIIFMILLSSGALAFEDIYVEQRKNIKSMLEYADKIFTYIFILE
MLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRA
LSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGRYYHCINTTDGTTFP
IEIVDNITDCLQLNASARWKNVKINFDNVGLGYLALLQVATFKGWMDIMYAAIDSRDVKQ
QPDYECNLYMYFYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYN
AMKKLGSKKPQKPIPRPLNKIQGMVFDFVTQQVFDISIMILICLNMVTMMVETDEQSKEM
DNILYWINMVFIVLFTSECVLKLTALRYYYFTIGWNTFDFVVVILSIVGMFLADIIEKYF
VSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM
SNFAYVKKESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPTKDNPG
SPIKGDCGNPSVAILFFVSYIIISFLIVINMYIAIILENFSVATEESAEPLSEDDFEMFY
EVWEKFDPDATQFMEYGKLHDFADALEPPLRVAKPNKIQLIAMDLPMVSGDRIHCLDILF
AFTKRVLGEGGEMDALRQQMEERFMASNPSKISYEPITTTLRRKQEHMSATIIQRAFRRY
LIRRTLKQASFMLKEKGKTSELLPGKEEMVIDKFNETSTTDKTDMTPSTTSPPSYDSVTK
PDRTREEKEKEDRGKDIRDYRK
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcacagccactgcttgcaccgccaggaccagacagcctcgtacatttcacccgggaa
tctcttgcagctattgagagatgcattgcagaggaaaaagccaagaaacccaaggaacaa
cacggtgaagatgctgaaaatggcccaaagccaaatcgtgacttggaagccggcaaatca
ctaccatttatttatggtgacatacctccagggatggtttctgagccattgcaagacctg
gacccattttatagaacaaaaaaaacttttatagtattgaacaaagggaaggcaatcttc
cgatttagtgccacacctgccttgtacattttaagtcctttcaatcctataaggaaacta
gctattaagattttggtacattcattgttcagcatgctcatcatgtgcactattatgacc
aattgtgtgtttatgacgatgcataatcctccagactggacgaagaatgtagagtatacc
ttcactggtatttacacatttgaatcacttataaaaattctagcaaggggcttctgtgta
gatcacttcacatttctccgagatccctggaactggctggatttcagtgtcattgttatg
gcgtatgtaacagaatttgtaaacttaggcaatgtttcagctctgcgaactttcagagta
ttgagagctttgaaaactatttcagtaataccaggtctcaagaccattgtgggtgcgctg
atccaatcagtgaagaagctgtccgatgtaatgatcctgactgttttttgtttgagcgta
tttgcactaatagggctacagctgttcatgggaaacctaaaacataaatgtgttcagtgg
ccacctgagttcaactttagtacaagtaacagctcatttgttctgaatgacaccatggcc
aatgagacaacgaacacatttaactttgacaaatacgtccaagacacgaaaaattactat
ttcttggaaggatccaaagatgcattgctttgtggtaatggctcagatgctggtcaatgt
cctgagggctatacatgcctgaaagctggaagaaaccccaattatggttacaccagcttt
gacacattcagctgggcattcttatcattatttcggctgatgactcaggacttttgggaa
aacctttaccagctgaccctgagagctgctggaaaaacgtacatgatattttttgtgctg
gtcattttcctgggatctttctacttggtcaatttgattctggctgttgttgcaatggcc
tatgatgagcaaaaccaggccaccttagaggaagcagtacaaaaagaagcagagtttcag
caaatgcttgagcaactgaaaagacaccaagaagcagctcaggctgctgcggcactagct
gccgaggaggaggatggaagtggaagagttggaatatgtgaaatgtcacagagttcctca
gaagcatcaaagcttagttcaaaaagtgccaaggaaagacgaaaccgacggaaaaagcgg
aaacaaacggaactgggaactgaggacaaggatgaggaaaagatgcacaaatcagaatca
gaagacagtggaagaaaagggaatggctttcgattttccattgatcgtaactgcctttct
tatgaaaagaaaaactcctctccacagcagtctctactaagtattcgtggatctatcttt
tcgcccaggcgtaatagcagaagcagcatcttcagtttcagagctcggactaaagatatt
gggtcagagaatgactttgctgatgatgagcacagcactttcgaagacaacgaaagcaga
aggggctcactctttatcccacgcaggcagggtgagagacgcagcagtaacgttagtcag
tgcagtaagtcctccaggatgctgccagtgctttcagtgaatgggaagaggcacagcaca
gtggattgcaatggagtggtttcacttgccggtggactttcaactccaacgtcacctgtt
ggacgccttctgccagaggtgataatagataagccaactactgatgacaatagcaccaat
acagaagccatcttcaagaagaggaggtcaggatctcaccaagtttcaatggattttctg
gatgatgctatacaaaggcagagagctttaagcgtggccagtattctcacgaatacaatg
gaagaattggaagaatctcgacagaaatgtccgccctgctggaacaaatttgcaaattca
ttcttggtctgggactgccatccacattggctaaaagtgaagaaaattgtccatttaatt
gtgatggacccctttgtggatctcgccatcacgatttgcattgtgctgaacactcttttt
atggctatggagcattaccccatgacaaaaaactttgaaaatgtactctcatatgggaac
ttggtatttaccggaatcttcactggagaaatgattttcaaaatcattgccttggatcct
ttttattactttcaagaagggtggaatatttttgacagcattattgtaagccttagtcta
atggaacttggtctggctaatgtggatggcctgtctgtgctacgatcattccgattgctc
agagtgttcaaattggcaaagtcgtggccaacactgaacatgctaattaaaattattggc
aactcagtaggtgctttgggaaacttgactttggtattagccatcattgtcttcatcttt
gctgtggttggcatgcaactctttggtaaaagctacaaggagtgcgtctgtaaaattcag
gaagaatgtaaattacctcgctggcacatgaacgacttcttccattcctttctcattgtg
ttccgagtcttgtgtggagaatggattgagacgatgtgggactgtatggaagtagcgggt
cagtcgatgtgcctcatcgtctttatgatggtcatggtaataggtaatcttgtggtactg
aacttatttttggccttgctattgagctcattcagtgctgacaatctcgctgctacagat
gatgacagtgaaatgaacaacttacaggttgctgtggggaggatacagagaggcattgcc
tatgtcaaaagaaatgtgcaagaattcttccagaaagccttcatcaagactaaagtcaca
gaggacatcaagcctcttgatgaactacacagcaagaaagataactatatctccgatcac
acaggcgttgagattagcaaagacatgaactaccagaaggatgaaaattgcaccaccagt
gggattggcagttgtttggtgaaatacaatatagatgaaggagactacatgtcctttatt
cacaatccaagcctgactgttactgtgccaatagctgtgggggaatcagacttcgagaac
ctaaacactgaagacttcaccagtgaatcagacctagaaggaagcaaagagaaattggct
gaaagcagctcatctgaagggagcacagttgacatcagtcctcctggacagggggaacag
ccagaagaaacaccagaggaatccatggagcctgaagcatgctttactgaaggatgtgtg
aggaagttcccattttgctatgtcaatatagaagagggctcaggcaaatcctggtggaac
ctgagaaagacctgctacaaaatagtggaacacaattggtttgagacattcattatattc
atgattcttctcagcagtggtgccttggcttttgaagatatttatgtcgaacaacggaaa
aacatcaaatcaatgcttgaatacgctgacaaaatcttcacttacatcttcattctggaa
atgttgctgaagtgggtggcttatggatttgtgaagtacttcacaaatgcatggtgttgg
ctggacttcctcattgttgatgtctctttggtgagcctcacagctaatgccttgggctac
tcagaacttggtgccattaaatccctcaggacactaagagctttgagacctctaagagca
ttgtcgcgattcgaaggcatgagggtggtcgtgaatgcactgcttggagcaattccttcc
atcatgaacgtgctgcttgtatgcctgatattctggctcattttcagtataatgggtgtg
aatctgtttgctggaaggtattatcactgtatcaacaccactgatggaactacgttccct
atcgaaattgttgacaatattacagattgccttcagcttaacgcatctgcacggtggaaa
aacgtaaaaataaactttgacaatgttggattaggctaccttgctttattacaagtggca
acttttaaaggatggatggatatcatgtatgctgctattgattcgagagatgtgaagcag
cagcctgactatgaatgcaatctgtacatgtatttttacttcgtcattttcatcatcttt
ggatctttcttcaccttgaacttgtttattggtgtcattattgacaacttcaatcaacag
aagaaaaagcttggaggtcaagatattttcatgactgaagaacaaaagaaatattataat
gcaatgaagaagctaggatccaagaagccacagaaacctataccaaggcccttgaacaag
attcaaggcatggtgtttgatttcgtaacccagcaagtttttgatatcagcatcatgatt
ctcatttgccttaacatggtcaccatgatggtagagactgatgagcaaagtaaagagatg
gataacatcttatattggatcaacatggttttcatagtcctgttcacgagtgaatgcgtg
cttaaactgactgcgcttcgctactattactttacaattggctggaatacttttgacttt
gtagtcgtcattctttctattgtaggcatgttcttagctgacatcattgaaaaatacttt
gtgtcgccaaccttgtttagagtgatccggcttgccagaattggccgtatcttgcgttta
atcaagggtgctaagggaatccgcacactgctgtttgcactgatgatgtcccttcctgcc
ttgttcaacattggtctattgctcttcttagtcatgttcatttatgccatatttgggatg
tctaattttgcttatgtgaagaaggaatccggcattgatgatatgttcaactttgaaact
tttgggaacagcatgatctgcttgtttcagatcaccacttctgctggctgggatgggtta
ctggctccaattttaaacagtgggccaccagactgtgatccaacaaaagataacccaggc
agccctatcaaaggagattgtggtaatccgtcagttgctattctattctttgttagttac
attataatatctttcttaattgtcataaatatgtacattgctattattttggagaatttc
agtgttgctacagaggaaagtgctgaaccactgagtgaagacgactttgagatgttttat
gaagtttgggaaaagtttgatccagatgcaactcagtttatggagtatggtaaattgcat
gattttgcggatgccttggaaccaccacttcgtgtggcaaagcccaacaaaatacaactc
attgcgatggatttgcccatggtcagtggagacagaattcactgccttgatatcttgttc
gcctttacaaagcgtgtgctgggtgagggcggagaaatggatgctcttcgacagcagatg
gaagaacgctttatggcatctaatccatccaagatatcctatgagcctatcacaaccact
ctgcgacgtaagcaggagcacatgtctgcaactatcattcaaagagctttcaggcgatac
ctgatcaggcgaactctgaagcaagcatctttcatgctcaaagagaaagggaaaacgagc
gagcttttaccaggcaaagaagagatggtgatagataaattcaatgaaacctccacgaca
gacaaaactgatatgactccttccaccacatccccaccatcctatgatagtgtaacaaaa
ccagacagaaccagggaagagaaagaaaaagaagacagaggcaaagatataagggattat
agaaagtaa
DBGET
integrated database retrieval system
