Hemitrygon akajei (red stingray): 140740471
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Entry
140740471 CDS
T11019
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140740471 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140740471 (cnot1)
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140740471 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140740471 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
140740471
NCBI-ProteinID:
XP_072925750
LinkDB
All DBs
Position
17:10878076..11107349
Genome browser
AA seq
2375 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEISHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFALQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
SDSGGIVKTMMDSSLADFMQEVGYSFCTSAEECRQIILQFGVREVTASQVARVLGMMART
HSGLSDGISLQSISAPGSGIWSDGKDKTDSAQAHTWNVEIFIDVVKEVNPNLNFKEVTYE
LDHPGFILRDSKGLQIAVYGIQKGMGIEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDIFC
FADYPCHTVVTDILKAPPEDDNREIATWKSLDLIETLLRLSELGQYEQVKQLFNFPIKHC
PDMLVLALLQINPTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCGSVMNKARQPPPGVMPKVRAPSTSSIETMSPVQIDPLSGMASL
TIGGSAASLTPSMQGFTTNLSSAFNTPQSPAKAFPPLSTPNQTTPFSGIGALPSQLPGSL
GTGSLTGMGTGGLALPTVNTDPFGQRKMSTSGLNPQTFQQSKMKTSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMYYFGIAALDRF
KNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQAQNKTPMARQVSAIVTTSTTTTVTKATTVTRPTGVSFKKDVPPSINTTNIETLLVA
TDQAERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSI
EPNFHSLYSNFMDTLKNLEFNKMVLSETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHIDLDVKSLLLEAYIKGQQEMLYVVPFVAKVLESSVRSMVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGTLLKDKEKLTNLEEQLSAPKR
ESKIPEEPPVVVTTAASVTPATTTTCTTTGPPQPQFSYHDINVYSLAALAPHITVNPNIP
LFQAHPQLKSYVRQAIDRAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNNFATALRAASPQQREMMEQAAAQIAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQIYDKCITELEQ
HLHAIPPSLAMNPQAQALRNLLEAVVMARNSRDAIAALGLLQKAVEGLLDATSSADSDLL
LRYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVDAVELLIRHHLVNMQQ
YDIHLAQSMENGLNYMAVAFAMQLVKILLVDERSISHITEADLFNTIETLMRISAHSRGN
APEGLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQQEQQHNP
SANPTIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVR
QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL
ISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPYLRNVELTKPMQILYKGTLRVLLV
LLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIA
PRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLY
VGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggacaacctg
accaagaagaattacaaatccagccagcaggagatctctcatattgtgaacagacacggc
cccgaggcagacagacatttattacgctgtctattctcgcatgtggatttcagtggcgat
ggtaaaagtagcggcaaagatttccatcagactcagtttctgattcaggagtgtgcatcg
ctgattaccaagcctaatttcatctcgacgctgtgctacgccattgacaatccattgcac
tatcagaagagtctgaaaccttcgccccacctgtttactcagcttagtaaagtgctcaag
ttaagcaaggtccaagaggttatctttggcctcgccttgctgaattcttctagctcagat
ctgcgagggtttgctctccagtttgtgaaacagaagctcccagatcttctgcgatcttac
atcgacgcagacgtaagcgggaaccaagaaggtggctttcaggatattgcaatagaagtc
ctgcacctgctcctgtcccaccttcttttcgggcaaaagggagcatttggtgttgggcag
gaacagattgacgctttccttaaaacattacgcagagattttccgcaagagcgttgtcct
gtggtgcttgcaccactgctatatcctgaaaaacgggacattctgatggataggattctg
tctgattcgggagggatagtgaagacaatgatggacagctcactagcagattttatgcaa
gaagtaggctacagcttttgtacaagtgccgaagaatgccgtcaaatcattttgcagttt
ggggttcgggaagtgacagcttctcaggttgccagggtactgggaatgatggctcggaca
cattcaggcctgagtgatggcatttccttacagtctatctcagcccccggaagtggaata
tggagtgatgggaaggataaaactgactctgcacaggcccatacttggaatgtagaaata
tttattgatgttgtgaaggaagtgaatccaaacctgaatttcaaggaggtaacctatgag
ctggatcacccaggattcatcctacgtgacagcaaaggcctgcaaatagcagtgtatgga
atccagaaagggatgggaattgaagtctttcctgttgatctcatttaccggccttggaag
cacgcagaaggacagctctccttcattcaacactcattaatgaacccagatatcttctgt
tttgctgactacccatgtcatactgttgtgacagacattttgaaagcccccccagaagat
gacaaccgggaaattgctacatggaaaagcttagacctcattgagaccttgctgcgtctt
tcagagttgggacaatatgagcaggtcaagcagctctttaattttcctatcaaacactgt
ccggatatgttggtactggctttactccagatcaacccaacctggcacactctgcgccat
gaactgatctccacactgatgccaattttcctgggtaatcatccaaattctgccattatc
ttgcactacgcatggcacggacagggtcaatctccctcaatccgacaattgatcatgcac
gcgatggcagagtggtacatgcgtggggagcagtatgatcaggctaagctctctcgcatt
ctagatgtagctcaagacttgaaggccttgtctatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgataaatgg
ttgactgataaaattcgtgagcatggggaaccatttatccaggcatgtgttacgttccta
aaaagacggtgtccttccatcatgggtggactggctcctgagaaggaacaacctaagagt
gctcaacttcctccagaaacactggctacaatgttggcttgtctacaggcttgtgcaggg
agtgtgtcacaggagctgtcggagactattctcacaatggtggctaactgtggcagtgtc
atgaacaaagcccgccagccacctccaggagtaatgcccaaggtccgagcacctagtacc
agcagtatagaaaccatgtcacctgtacagattgatccattatctggcatggcttcgttg
acaattggtggatcagctgcatccctcactccgagtatgcagggtttcacaactaacctg
agttctgcattcaatactcctcaatcaccagcgaaagcctttcctccactctcgacacca
aaccagacaactcccttcagtggtatcggcgctcttccgtctcaactaccaggaagtttg
ggcacagggagtttgactggcatgggaactggtggacttgcactaccaactgtgaacact
gacccttttgggcagcgaaagatgagcacatctggactgaacccacaaacattccagcag
agtaagatgaaaacttctgacctttctcaggtatggccggaggcaaatcagcactttagc
aaggagattgatgatgaagctaacagttacttccagcgaatctacaaccatccaccccac
cctaccatgtctgttgatgaggttctggaaatgctgcagagatttaaggattccaccatt
aagcgtgaaagggaggtttttaactgtatgcttcgtaacctgtttgaagagtaccgcttc
ttcccccagtatccagacaaagaactgcacatcacagcctgcttatttggtggaattatt
gaaaaggggttggtcacatatatggcattgggacttgcactgcgctatgttcttgaagct
ttgcgcaaaccgtttgactccaagatgtactactttggcattgctgcactagacagattt
aaaaacagattgaaggactatccccagtattgtcaacatttagcttctattggccacttt
ttacaatttcctcatcatttacaggagtacattgaatatggccagcagtcccgagacccc
cctgtgaaaatgcagggtagcattacaacgcctggcagtattgctttggcacaagctcag
gctcaagcacaggctcagaataagacccctatggccagacaggtcagtgccatagtaacc
acttccacaaccaccacagtcaccaaagcaactacagttaccaggccgactggagtgagc
tttaagaaagatgtaccgccctctatcaatacaacaaacatagaaacattgttggtggcc
acagaccaggcagagaggatagtggaacctcctgaaaatattcaagaaaaagtggcattc
atctttaacaacctctcacagtccaatatgacacagaaggtggaggaactgaaggagaca
gtgaaggatgagtttatgccctgggtatctcaatatttggttatgaagcgggttagcatt
gaaccaaactttcacagtctgtattcaaactttatggataccttgaaaaacctagagttt
aacaaaatggtgctctctgaaacgtacagaaacatcaaggtactgttaacttcagacaag
gctgcagcaaacttctcagatcgatcattgttgaagaacctgggacactggttgggcatg
atcactttggccaaaaataaacccattttgcatattgatctggatgtgaaatcattgctg
ctggaagcttacataaaaggtcagcaggagatgctctatgttgtccctttcgttgccaaa
gttttagagtccagcgttaggagtatggttttcaggcctccaaatccgtggacgatggct
atcatgaatgtattagcagagctacatcaagagcatgatttgaagttaaacctgaagttt
gagatcgaggtcttgtgtaaaaatctggctttggatatcaatgacttgaagcctggaaca
ttattgaaggacaaagaaaaattgacaaatctagaagagcagctatcagctccaaagaga
gagtccaaaatacctgaggaaccgccagtagttgtcaccactgctgcatcagtgactcca
gcaacaacaaccacttgtacgaccactggccctccacagccacagttcagctatcacgac
atcaatgtatattctctggctgccttggctccacacattacagtcaatccaaatattcct
ttgtttcaagctcatccacagctgaagtcatatgttcggcaagcaatcgaccgtgctgtg
caggagctcgttcatcctgtcgttgaccgttccatcaaaattgccatgaccacctgtgaa
cagatagttcgcaaagattttgctctagattctgaagagtcacgaatgagagttgcagca
catcacatgatgcgtaacttgactgcagggatggccatgattacgtgcagggagccatta
ctgatgagcattgctacaaacctaaagaacaactttgccacagctctacgggctgcatct
ccacaacagagggagatgatggaacaagcagctgcccagatagcacaagacaattgtgag
cttgcatgttgttttattcagaaaacagctgttgaaaaagcaggtcctgaaatggacaaa
cgacttgcaacagagtttgaactccggaagcatgctaggcaggaaggtcggcgatactgt
gatcctgtagtactgacctatcaggctgagcgtatgcctgagcaaatcagattgaaggtg
ggtggtgtcgatcccaagcaactggctgtctatgaagagtttgctcgtaatattccagga
tttcttcccagcaatgatatttctcagcccactggcttcttggccaagcccatgcagcaa
gcttgggcaactgatgatattgcacagatttatgacaagtgcattacagaactggagcaa
catctacatgcaattccaccatctctggccatgaaccctcaggctcaggcacttcgtaat
ttactggaagctgtggtaatggccaggaattcacgtgatgctattgctgctcttggcctc
ctgcagaaggctgtggagggactgctggacgccactagtagtgcagactcggacctcctg
cttcgatacagagaatgccatttgctggttttgaaagctctgcaggatgggcgtgcttat
ggatctcagtggtgtaacaataaaatcactaggtgcctaattgagtgccgtgatgagtac
aagtataatgttgatgctgtggagttgctcattaggcatcatctggtgaacatgcagcag
tatgatatccacttagcccagtcaatggagaatggcctgaattacatggctgtagccttt
gccatgcagttggtgaagattctcttggtagatgagagaagcattagccacatcactgaa
gcagatttattcaacactattgaaacacttatgaggatcagtgctcattccagaggaaat
gcacctgaaggattgccacagctcatggatctcctgagggctaactacgaagccatgatg
gatcgtgcacatggcggccccaacttcatgatgcattctgggatatcacaggcatcagaa
tatgatgacccacctggacttcgggagaaggcagaatatttactgagggaatgggtgaac
ctataccactctgcagcagccggacgggacagcaccaaagcattctctgcctttgttggg
cagatgcaccagcagggaattttgaagactgacgaccttattactcgttttttccgcctc
tgtaccgaaatgtgcgttgaaattagttaccgtgcacaacaggagcaacagcacaatcct
tctgccaatcccacaataatcagggccaagtgctatcacaacttagatgcttttgtcaga
ttgatagccctgctggtcaaacactctggggaagctaccaatacggttactaaaataaat
cttcttaacaaggttctggggattgtagtaggagtcctactgcaagatcatgaagtacgt
cagagtgagtttcagcagctgccatatcatcgaatcttcatcatgttgttgctggagtta
aatgccccggagcatgtgctggaaacaatcaatttccagactctgactgctttctgcaac
acattccacatcttgcggcccactaaagctcctggatttgtctacgcctggctggaactg
atttcccaccgtatcttcattgcgagaatgctggcgcatacacctcaacagaagggctgg
ccaatgtatgcccagctgctgattgatttgttcaagttccttgctccttacttgaggaat
gtggagttgacaaaacctatgcaaattctttataagggcactctgcgtgtcttgcttgtc
cttttgcacgactttccagagtttctttgtgactaccattacggcttctgtgacgttatc
ccaccgaactgtattcagctgcgtaacctgatcctgagtgccttcccacggaacatgcgg
ctgccagatccgttcacacctaatctaaaggtggatatgctgagtgaaatcaacattgct
ccccgaatactgaccaacttcactggagtgatgccacctcagtttaagaaggacttggac
tcctatttgaagacgcgatctccagtgactttcctgtcagaattgcgcagtaacctgcag
gtatcaaacgaacctggtaaccggtacaacattcaactaataaatgccctggtgctgtat
gtgggaacgcaggcgattgctcacatccataacaagggcagcacgccatccatgagcacc
atcacgcactcggcacatatggacatcttccagaacctggctgtggatcttgatacagaa
ggtcgatacttgttcctgaatgccatcgccaatcagctgcgttaccctaacagccacact
cactatttcagctgcactatgctgtatctgtttgctgaagcaaatacagaagcaatccag
gaacaaatcaccagggtcctgttggaaaggctgattgtaaacagacctcatccatggggg
ctccttatcacctttattgaactaattaaaaatccagccttcaagttctggaaccatgag
tttgtccactgtgctcctgaaattgagaagttgttccagtctgtagctcaatgctgtatg
ggacagaagcaggcacaacaagtaatggaaggcaccggtgcaagttaa
DBGET
integrated database retrieval system
