Halorhabdus sp. CBA1104: Hrd1104_00325
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Entry
Hrd1104_00325 CDS
T06289
Symbol
prf1
Name
(GenBank) peptide chain release factor 1
KO
K03265
peptide chain release factor subunit 1
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Hrd1104_00325 (prf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hala03019
]
Hrd1104_00325 (prf1)
03012 Translation factors [BR:
hala03012
]
Hrd1104_00325 (prf1)
Messenger RNA biogenesis [BR:
hala03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
Hrd1104_00325 (prf1)
Translation factors [BR:
hala03012
]
Eukaryotic type
Release factors
Hrd1104_00325 (prf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
Motif
Other DBs
NCBI-ProteinID:
QGN05888
LinkDB
All DBs
Position
55810..57063
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AA seq
417 aa
AA seq
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MSSQEQEGDQTDRQKYEFRKVIEELEDYRGSGTQLVTIYVPDDTQVSEVVAHVTQEHSEA
SNIKSKDTRTNVQDALKSIKDRLRYYETYPPENGMVLFSGAVDTGGGRTDMITRVLENPP
QPIQSFRYHCDSEFLTEPLAEMLTDKGLFGLVVLDRREANVGWLRGKRVDPVKSASSLVP
GKQRKGGQSAQRFARLRLEAIDNFYQEVAEMANELFVPERHDLDGILVGGPSPTKDEFLD
GDYLHHELQDMVLGKFDVSYTDESGLYDLVDAAEDVLAEHEILQDKQVMEQFFKELHDGD
LATYGFEQTRQNLNMGSVEQLLISEDLRKEALSYACPNDHDEYELVDPDEQPPERTCSTC
GESMDVEARQDAIEHLIELAEQRGTETVFVSTDFEKGEQLLTAFGGIAGILRYSTGI
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccaggaacaggaaggcgaccagaccgaccggcagaaatacgagttccggaag
gtcatcgaggaactggaagactaccggggatccggtacccagctcgtgacgatctacgtc
ccggacgatacgcaggtgagcgaagtagtggcccacgttacccaggaacacagtgaggcc
agcaatatcaagtccaaagacacccgaacgaacgtccaagacgccctcaagagcatcaag
gaccgactgcgatactacgagacgtatccacccgaaaacggaatggtgctgttttcgggt
gctgtcgacaccggtggcggccggacggacatgatcacccgcgttctcgaaaatccgccc
cagccgatccagtcgtttcggtatcattgcgactcggagtttctgaccgaacccctcgcg
gagatgctgaccgacaaaggcctgttcgggttggtcgttctcgaccgccgcgaagccaac
gtcggctggctgcggggcaaacgtgtcgacccagtcaagtcggcctcctcgctggtcccg
ggcaaacagcgcaaagggggccagtccgcccagcggttcgcccgcctgcgtttggaggct
atcgacaacttctatcaggaggtcgccgagatggcaaacgagctgttcgtccccgagcgc
cacgatctggacggcattctcgtcggcggtccctcaccgaccaaagacgagttcctcgat
ggcgattatctccatcacgaactccaggatatggttctggggaaattcgacgtctcctac
actgacgagtctggcctctatgacctggtagatgctgccgaggacgtgctcgccgaacac
gagatcctccaggacaagcaggtcatggagcagttcttcaaggaactgcacgacggtgac
ttagcgacctacggcttcgagcaaaccagacagaacctcaacatgggctcggtcgagcaa
ctcctcatcagcgaagacctccggaaggaagctctctcgtatgcctgtccgaacgaccac
gacgagtacgaactcgtcgacccggacgaacaaccgccagaacggacgtgttcgacctgc
ggtgagtcgatggatgtcgaagcacgccaagacgccatcgaacacctcatcgaactggct
gaacagcgcggcaccgagacggtctttgtctcgactgacttcgagaagggcgaacagcta
ttgacggcctttggcggcatcgcgggcattctccgttactcgaccggcatctaa
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