Halocella sp. SP3-1: D7D81_19210
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Entry
D7D81_19210 CDS
T05769
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hals
Halocella sp. SP3-1
Pathway
hals03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hals00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D7D81_19210 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hals03021
]
D7D81_19210 (rpoB)
03400 DNA repair and recombination proteins [BR:
hals03400
]
D7D81_19210 (rpoB)
Enzymes [BR:
hals01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D7D81_19210 (rpoB)
Transcription machinery [BR:
hals03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D7D81_19210 (rpoB)
DNA repair and recombination proteins [BR:
hals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D7D81_19210 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AZO96553
LinkDB
All DBs
Position
complement(3989263..3992517)
Genome browser
AA seq
1084 aa
AA seq
DB search
MANVLKRKRYSFAKIKDAQVVPDLIRTQLNSYEWFLEQGLKEVFNEITPIEDFSENLILE
FVDYYLDEPDYQIDECRDRDATYSAPLQVKVRLINKETGEVKEQEVFMGDFPLMTDKGTF
IINGAERVVVNQLIRSSGVYFDEERTKDGRRLISANLIPNRGAWIEFEYDKKRIVSVRVD
RTRKMPSTVLFRALGYGSDAELLDIFDNYEVIQDTIERDNTDSEDEALIELYKRLRPGEP
PTVESSKNLINSLFFDPKRYDMAAVGRYKLNKKLKLDIDPARRCLDKRDIVETVRYLLKL
IDNHPEFNIDDIDHLGNRRLKTVGELLQNQFRIGLSRMERVVKERMTIQDIDVVTPQALI
NTRPVVASIQEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHHS
HYGRICPIETPEGPNIGLIGSMGSYARTNEFGFLETPYRKVIDGKATDEIEYLTADEEDN
YTVAQANEPIDEGGNFKHEFVLARRRGEILEALPQNVDYMDVSPKQLVGVSAALIPFLEN
DDANRALMGANMQRQAVPLLIPDAPIVGTGMEYKSAKDSGAVIVAKNSGTVVKVSGDKVL
IKTDEGNVDSYKLLKFKRSNQGSCVNQRPIVRKGDVVEAGDIIADGPSTNKGELALGRNT
LIAFMPWEGYNYEDAILISERLVKEDAFTSVHIEEHEAEARDTKLGPEEITRDIPNVGES
ALKNLDERGIIRVGAEVKEGDILVGKVTPKGETELSAEERLLRAIFGEKAREVRDTSLKV
PHGEEGIVVDVKVFSRENGDELKPGVNRLVRVYIATKRKISVGDKMAGRHGNKGVISRIL
PEEDMPFMPNGEPVEIVLNPLGVPSRMNIGQVLETHLGMAAKALGLYIETPVFNGAREDE
VEDKLEEAGLSRDGKTVLYDGRTGEPFDKRVTVGYMYILKLHHLVDDKIHARSTGPYSLV
TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKTYEAIVKGENV
PEPGIPESFKVLIKEMQSLGLDAKIYTEDEEELQIAEEDDDFNDTAKKLGLDMDLTNDSD
EEEE
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgttttaaagaggaagagatatagttttgccaaaatcaaagatgcacaggtt
gtgcctgatttaataaggacacaacttaattcgtatgaatggtttctggaacagggatta
aaagaggtctttaatgaaataacaccaattgaagatttttcggaaaatttaatcctggaa
tttgtagattattatctggatgaaccggattatcagattgatgaatgccgtgacagggat
gctacctattcggctcccttacaggtaaaagtaagattaattaataaggagacaggtgag
gtaaaagagcaggaagtctttatgggggacttccctttaatgactgataaggggacattt
ataattaatggagcagaaagggttgttgtcaaccagttgatccgttcttcaggtgtttat
tttgatgaagaaaggaccaaggatggtcgcaggcttatttctgctaaccttattcctaac
aggggtgcctggatagaatttgaatatgataaaaagagaattgtttcagtgagggtagat
agaacaagaaagatgccttctactgtcttatttagggcccttggttatggtagtgatgca
gaattacttgatatttttgataattatgaggttattcaggatactattgaaagggataat
actgattcagaagatgaggccttaattgaattatataaaaggcttagacctggtgaaccg
ccgacagtagagagttcgaagaatctaataaactcccttttctttgaccctaaacggtat
gatatggctgcagttggtagatacaaactaaataaaaaactcaagttggatattgatcct
gccaggagatgccttgataagagagatatcgtggaaacagttagatatcttcttaagtta
attgataatcacccggaatttaatatagatgatattgatcacctgggtaatagaaggtta
aagacggttggggaattattgcagaaccagtttagaattggtttatcaagaatggagagg
gtagtaaaagagaggatgacaattcaggatatagatgttgttacacctcaagccctgata
aatacccgtccggttgttgcttctattcaggagttttttggtagtagtcagttatcacaa
tttatggaccaaaccaatcccctctctgaactgacacataaacgtcgtttgagtgcactt
ggtcctggaggtttaagtagggacagggctggctttgaagttagggatgttcaccattct
cattatggtaggatctgtcctattgagacacctgaaggaccaaacattgggctgattggt
tctatggggtcatatgcccgtacaaatgaatttgggtttttagagactccttaccgcaaa
gttattgatggaaaagcaaccgatgagattgagtatttaacagctgatgaagaagataat
tatactgttgcccaggccaatgaacctatagatgagggtggtaactttaaacatgagttt
gttctggccagacgcaggggcgagatattagaagcattaccccaaaatgtcgattatatg
gatgtctcaccaaaacaacttgttggtgtatccgctgccttaataccctttctggaaaat
gatgatgctaatagggccttaatgggtgctaatatgcagagacaggctgttcccttatta
attcctgatgcacctattgtgggtacgggaatggaatataagagtgctaaagattctggt
gccgttattgttgctaaaaactctggaaccgttgttaaggtatcaggtgataaggttttg
atcaaaacagatgagggtaatgttgatagttacaaattacttaagtttaaacgttctaat
cagggtagttgtgtcaatcaacgccctattgtccgtaagggggatgtagtagaagccggt
gatattattgctgatggaccctcaactaataaaggagagcttgctttaggccgtaataca
ttaatcgcttttatgccttgggaaggttataattacgaggacgctattttgatcagtgaa
agacttgttaaagaagatgcttttacctctgtccatattgaggaacatgaagctgaagcc
cgggatactaaactgggtccggaggaaataaccagggatatccctaatgtaggggaatca
gcccttaagaatcttgacgaaaggggtattatccgtgttggagcagaggtaaaagagggc
gatatactggttggtaaggtcacaccaaagggtgagacagagttgtctgctgaagaaaga
ttactcagggctatttttggtgaaaaggccagagaggtccgggatacttctttgaaggtg
ccgcatggtgaagaaggtattgtagttgatgttaaagtcttttcccgcgaaaatggtgat
gaattaaaaccaggtgtaaatagacttgtacgggtttatattgctactaaacggaaaatt
tctgttggtgataaaatggcaggtcgtcacgggaataagggtgttatctccaggatacta
cctgaagaagatatgccgttcatgcccaatggagaacctgttgagatagttcttaaccca
cttggtgttccctccagaatgaatattggtcaggtgctggagacccatttaggaatggcg
gccaaggcacttggtttatatattgaaacaccagtctttaatggtgcccgtgaagatgag
gtggaggataaactggaggaagctggtctcagccgtgatggtaaaacggttctttacgat
gggcgaacaggtgagccttttgataaaagagtaactgttggttatatgtatatccttaaa
ctacatcacctggttgatgataaaatacatgcccgttcaacaggaccgtattcacttgtt
acccagcagccgcttggcggtaaagcccagtttggtggtcagcgttttggtgaaatggag
gtgtgggcactggaggcctatggtgctgcctataccttgcaggagatgttaacagtcaag
tctgatgatgttgtcggtagggtgaagacatatgaggctattgttaaaggtgaaaatgtg
cctgaacccggtataccggaatccttcaaggttttaataaaagaaatgcagagtctgggg
ttagatgccaagatatatactgaggatgaagaggaattacagatagctgaggaagatgat
gattttaatgatacagctaaaaagcttggtttagatatggatttaactaatgactctgat
gaggaagaagaataa
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