Homarus americanus (American lobster): 121866731
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Entry
121866731 CDS
T07477
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hame
Homarus americanus (American lobster)
Pathway
hame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121866731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hame03019
]
121866731
Messenger RNA biogenesis [BR:
hame03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121866731
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121866731
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_CHD6-9
Motif
Other DBs
NCBI-GeneID:
121866731
NCBI-ProteinID:
XP_042222365
LinkDB
All DBs
Position
Unknown
AA seq
2500 aa
AA seq
DB search
MNLDSLTAALSHIGNLVASLTKKNLNSSVQEIQEVVCQFGGEAERHLYRVLIGHLEWSGP
QGESHRPSPNNNNNNKDKEVASSVGASTLTWSSTSGGAGALLLQHLAATLPPTSFIANLA
FATANPPNSNKLIKPQWVSGVCKALRLSRLQEITLCLYILQATNSEVRNQSIALLKGKLP
DLVRAYVDTESGDRELLELSTEALHLLLTHIVHLWRDPPSALLPQESRQAFICALQREFP
RSRVPVVLAPLLYPDSDIPMEKITQEPPANMAKNLLDGSLADLVLELGYSFCSTVEECRN
NLANVGVSSITPAAVSKVLGVMVRTHTGLPSEQIGLQNLNSPSSLWSDNKDKTPSSQSQS
TSGGEVCLGGSGNLSGPHGWNVEVFVKGLLEVVPNLNVKEVISKLDHKGFLLKDRQGLKL
LITALRCLLQGQGLRLEMFPVDCYYHQWKNTEEQLSLISQILKNPEIFCFTDFPCHLVST
DSLKTLPELDNKEVATWKSVQLLETLLYLGESGHYAAVKELFTFPIQHCPDILALGLVQV
PLPYTMLRQDLIASLIPIFLGNHPNAAIILHHAWHTQNHTSTVRQIVMHAMAEWYMMESD
QARLSRILDVAQDLKALSLLLNAQSFPFVVDLACLAYRREFLKLDKWLTDKIREHGEPFI
SSCVKFLQRRCPQLLSGKEDMMPKSSQLPPETMATILVCLNACALNVSQELSDTILQMVQ
NCNLMNRPRTQQVGVIGFPGPGPTQSNEGPLGNIASTLSNLNLGNAGVSSSIFPTPASSS
MTLGGLGSLGAAPGSPGRPLGPSAAPGTSQSPLSSILPALQLGPPHPAAVGSQLPALPTS
SIIPSSLRTHTVQPTVAQTPRQMDMSQIFDMPQLVSKEVEDEANSYFQRIYNHPPHPTLS
IEEVLDMLKKFHESTNKREREVYSCMLRNLFEEYRFFPTYPDKELFTTARLFGGIIEQGL
VEYMALGVALRYVMEALQKPHGSKMYYFGIVALDRFRSRLKEYPRYCQHLMAIQHFNEFP
PHLIEYIKYGTQSQEPPSRPSGVVLPPSINVSPSTPAPGTTTSVVSSVPAVVVPPPPVVS
TVVSSVAKTITATTTTTTTAAISKPQSMSVASAAVGSGKQQPTITTTNIETLLVATEKEE
KITPPPEHIQDKVGFIFNNLAQVNLPQKCEELREVVGEDYWLWVAQYLVMKRASIENNFH
TLYSLFLDQMKMNNVNSMVCRETLRNIKVLLRADKSAANFSDKSLLKNLGHWLGMLTLAK
NKPILHTDIDMKSLLIESYNKGLQEMQYVIPFVAKVMESCAKSRVFKPPNPWTMAIMNVL
AELHKEPDMKLHLKFEIEVLCNKLEINLEELKPANVLNDRDRIARLKPQLSQPGGSKRAE
STPLFPALQGFSSTPFMPKTSWPQVAPPGAVVDTTTVTAQSSSVGATPTPPTVLPPHPST
TPTPIQAQQQPASEPRFIYSDISVASLRGLDPHISVSVPQVCGVATNAQLKQLVRHAVEL
AVQEIVAAVIERSIKIAITTAEHIIKKDFALDPDESRMRAATHHMVRNLTAAMAMITCRD
YLATNITKSIKQGLMQAFSRTNPQQLPQQVEQMEQLAAAIAQENVGIACAFIQKTAAEKA
VIEMDKRLSQEYEARKVARTEGRRYCDPMVLTYQAERMPEPIRLKVGGVTPPQMAVYEEF
ARNIPGFLPIADQDTMFIAKPVPISSAFGTEEATAFLVLTERISAELEHTIQAFTTLAPT
SPLIPMLHSLREGLLLTRTNRDAHAAQVLLRKCVENLMEGARELPNEPELNQLALRFRDC
HLIVLKAMADHRSYGVIWTSKNITKCWAEARDEIKYNLDVGDWFIRSNLFSLQLLDEHLA
RTLDDPRVHSYIPSLFVMQLVQMYLIDDPSNSVLNETDLQLTLEALVRLCHSRQAPEGLV
SLIEALRMKHDLLSGERLTGGNNLSGSNNPLSAGPSLHFHSGVTQARDFQDPPALQEKTE
VLLREWIQMYHSPTAGQGSASAFQHFVKQMNLHGILKTDDLITRFFRICISMCRDLCVRS
ILEQGQGPSPTYVRSKCFQNLDAFVRLIALLVKHSGEATNPTTKINLLNKVLGLVCGIMI
HDIESNGTEFQQLPYHRILIMLFLELNAPEAILESINLPVLMAFTQTLHLLRPSKCPGFA
YAWLEIVSHRVFIGRMLAITPQQKGWSMYSMLLADLFKFLAPFLRNAELAKPLTMLYKGT
LRVLLVLLHDFPEFLCEYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDML
PEITISPKIHTTVANLIQPPDFKKNLDSYLKNRTPVTFLSDMRTYLQQASNEPGMSYNMS
VMNSLVLYVGMQAISQIHSKGLTPSMATIAHSAHMDIFQNLGVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTLLHLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
SFKFWSHEFVKCAPEIEKLFESVARSCMVQKVSAAREGEA
NT seq
7503 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgctaactgctgctttgtctcatattggtaatctggtcgccagtttg
acaaagaaaaacctgaactctagtgttcaagagattcaggaagtggtgtgtcagtttggt
ggagaggcagagcgacacttgtaccgggtgctgattggtcacctggagtggtctggacct
cagggagaaagtcatcgaccctcaccaaacaacaataataataataaggacaaggaggtt
gcttccagtgtcggtgcgtccacccttacgtggtcatccactagtggtggggccggtgcc
ctccttctgcaacatttggctgccactcttcctccaacttcttttattgccaatcttgcc
tttgccactgccaatccacccaattccaacaagctcatcaagccacagtgggttagtgga
gtgtgcaaggcactcagactttcccgcttgcaggaaattactctttgtttgtatattctc
caagctaccaattcagaagttcggaatcagtccatagcactcctcaagggcaaactcccc
gatcttgtgcgagcctacgtcgacactgaatcaggagatcgggagttgttggagctgtca
acggaagcccttcatctgttacttactcatattgttcatctgtggagagatcccccttct
gcactgctacctcaggagtcacggcaggccttcatttgtgctctacagcgcgagtttcct
cggtcccgtgtccctgttgttctcgctccattgctttacccagactctgacattcctatg
gagaagataactcaagaacctcccgccaacatggcaaaaaatcttttggatggttcatta
gctgatctagtcctcgagttgggctatagtttctgcagtactgtagaagaatgtagaaac
aacctggccaatgttggggtgagctccataaccccagcagctgtgtcgaaggtcctcggt
gttatggtcagaactcatacaggcttaccatctgagcaaattggactccagaacctaaac
tccccaagttccctgtggagtgacaataaagacaaaaccccaagtagccagtctcagtca
acctctggaggtgaagtatgtttaggtgggtcaggaaacctctcaggtccccatggatgg
aatgttgaggtctttgttaaaggtcttctggaagttgttccaaacctcaatgtgaaagag
gtgatctcaaagttggaccacaaaggatttttattgaaagacagacaaggcttgaagcta
ctgatcacggcactgagatgccttcttcaaggacaaggattgaggttagaaatgttccct
gtggattgttactatcaccagtggaagaatactgaagagcaactcagtctgatttcacag
attctcaagaatcctgaaatattctgcttcacagatttcccatgccacttggtatccact
gattctctcaagactctgccagagcttgataacaaagaggtggctacgtggaaatcagtc
caactactagaaactcttctctaccttggggagagtggccactatgcagctgtcaaagag
ttgttcacatttcccatccaacattgtccagatattttggcgcttggattggttcaggtg
cctttaccatacaccatgctgcgacaagacttaattgcatcacttattccaattttcctt
ggaaatcatccaaatgcagccatcatcttacaccatgcctggcatacacagaaccataca
agtacagttcgccaaatcgtcatgcatgcaatggcagagtggtacatgatggaaagtgat
caggcaagacttagtcgtatcttggatgttgcccaagatctcaaagccttatcactcctc
cttaatgcccagtcctttccatttgtggtggatttggcatgcctggcctacagacgtgaa
tttttaaagcttgacaagtggctgacagacaagattcgagaacatggtgagccctttata
tcctcttgtgtgaagttccttcaacgaagatgccctcagctgttgagtggtaaagaggat
atgatgccaaagtcgtcacagctacctcctgagacaatggctactattcttgtgtgccta
aatgcatgtgctctgaacgtctcccaggagctttctgacaccatactgcaaatggttcag
aattgtaacctgatgaaccgacctcgcacacagcaggtgggagtgattgggttcccaggt
cccggtccaacccagtcaaatgaaggacctcttggcaatattgcatcaactttaagtaac
ttaaaccttgggaatgctggtgtctcatcctcaatcttcccaaccccagcctcatcttct
atgacccttggtggtttaggttcccttggagcggcccctggttccccaggccgcccactt
ggaccttccgctgctcctggaacttcacagtctcctctctcctccattttaccagctcta
cagctaggaccaccacatccagcagcagtaggatctcagcttccagcattgccaacttca
tctataattccatcatcattaaggactcatactgtgcaacccactgttgctcaaacacct
agacaaatggatatgtcccagattttcgacatgcctcaactggtaagcaaagaagttgaa
gatgaagccaatagctacttccagcgtatttacaaccaccctccgcatcccacactctct
atagaagaagtattggacatgctaaagaaatttcacgagtccaccaacaagagagagcgt
gaggtatattcctgcatgttacgtaatctttttgaagaatatcgtttcttcccaacttac
ccagacaaagagctctttaccacagcaagactgtttggtggcatcattgagcagggtcta
gtcgaatatatggctcttggggttgctcttaggtatgtgatggaggccctccagaagcca
catggtagtaagatgtattattttggtattgtggccttggataggtttcgtagtcgcctt
aaggaatatccacgatattgtcagcacctgatggcaatacaacacttcaatgagtttcca
ccacatcttatagagtacatcaagtatggaacacagtcacaagaaccgccctcccgcccc
tctggcgttgtgcttcccccatcaataaatgtttctccaagtactccagctccagggacc
acaacatctgtagtgtcttcagtacctgctgtagttgttccaccaccaccagtagtgtca
actgttgtgtcatcagtggctaagactatcactgcaacaaccaccaccactaccactgct
gccatctccaaacctcaatcaatgtctgttgcttcagcagcagttggatctgggaagcag
caaccaacaattactaccaccaatattgagactcttcttgttgctacggagaaggaagag
aagataaccccgcctcccgagcacatacaagataaagttggcttcatcttcaataacctt
gctcaggttaacctgcctcagaagtgtgaggagctgcgtgaagtggttggagaagattat
tggctgtgggtagcacagtatctggtgatgaagcgtgcttccattgagaacaactttcat
actctctactctctatttcttgaccagatgaaaatgaacaatgttaattccatggtgtgc
cgtgagactcttagaaatattaaggtactcctgagggctgataaatcagcagccaatttt
tcagataagtcactgttgaaaaatcttggtcattggctgggaatgctaaccctggccaag
aataaaccaatactgcacactgacatagacatgaagtctctactcatagagtcttacaac
aaagggttgcaggagatgcagtatgtgattccatttgtggctaaggtgatggaatcctgt
gccaagagccgagtgtttaaaccaccaaacccatggaccatggctataatgaatgtcctt
gcagagcttcacaaagaaccagatatgaagcttcatctcaagtttgagattgaggtgctg
tgtaacaagttggagatcaatctggaagaattgaagcctgctaatgtgttgaatgaccga
gaccggattgcccgccttaaaccccagttgtcacagccgggtggatctaagcgagcagag
tcaactcctctctttcctgctcttcagggtttttcttctactccttttatgccaaagaca
agctggccacaagttgcgccaccaggcgctgttgtagatacaactaccgtaactgctcag
agttcttctgttggtgccacacctacacccccaacagtcctgcctccacatccctccacc
acacccacacctatccaagctcaacagcaacctgcctcagagccacgctttatttactca
gatattagtgtcgcttcacttagaggtttggatcctcacatatctgtctctgtacctcag
gtttgtggtgttgcaaccaatgcacagttgaaacagttggttcgccatgccgtagagttg
gccgtccaagaaattgttgcagcagttattgaacgcagcatcaagattgccatcaccact
gcagagcacattattaagaaagactttgcattagatccagatgaatctcggatgcgtgct
gcaacacatcacatggtgcggaacttgactgctgccatggccatgattacctgcagggac
tatcttgcaactaatattacgaagagcatcaagcagggattaatgcaagcattttccaga
accaacccacagcagttgcctcagcaggtagagcagatggagcagctggctgcggctatt
gctcaggagaatgttggcattgcctgtgcctttatccagaagactgccgcagagaaggct
gttattgagatggataagcgactgtcacaagaatatgaggctcggaaagttgcacgaaca
gaaggccgacggtactgtgatcctatggtattaacttatcaagctgagcgtatgcctgag
ccaattcgcttaaaagtaggtggtgtcaccccacctcaaatggctgtgtatgaagaattt
gctcggaacatacctggatttttaccaattgcagatcaagataccatgttcatagcaaaa
cctgtacctattagttcagcatttggtactgaagaggcaacagccttcctggtgctaaca
gaaaggatcagtgcggagttggaacacaccatccaggccttcacaaccctcgcacccaca
tctccccttatacccatgctccactcattgcgtgaaggactcttgcttacacgaaccaac
cgggatgcccatgctgctcaagtgctgcttagaaagtgtgtggaaaacctaatggaaggt
gcacgggaattgcctaatgaacctgagctgaatcagttggctctccgcttccgtgactgt
cacctcattgttcttaaggcaatggctgatcatcgatcttatggtgtgatctggacatca
aaaaatattactaaatgttgggcagaagctagagacgagatcaaatacaatcttgatgtt
ggagattggtttattcgctccaatttgttcagtctccagctgctggatgaacacttggca
cggacccttgatgatcctcgagtacactcctacatcccctccctctttgtgatgcaacta
gtccagatgtaccttatagatgaccccagcaatagtgtgctaaatgaaactgacctacag
ttgactttggaggccttggtgcgattgtgccattcccgacaagctccagagggtcttgtt
tcacttattgaagcattgcgcatgaagcatgacttattaagtggtgagcgtttgactggc
ggaaacaacctgagtggatcaaacaacccattgtcagcaggccctagccttcatttccat
tcaggtgttacacaagctagagattttcaggatccaccagctctacaagagaaaactgag
gtgttgttgagagaatggattcaaatgtatcactcgccaacagcaggccaaggctcagca
tctgcttttcaacatttcgtgaagcaaatgaaccttcatggaatccttaaaactgatgat
ctcattactagattcttccgcatctgcatcagcatgtgccgagatctgtgtgtgcgttcc
attctggagcaaggtcagggcccttcacctacttatgtacgcagcaagtgtttccagaac
ttggatgcatttgtgcggctcattgccctattagtcaaacactcaggggaggctaccaat
cctactaccaagatcaatctactcaataaggttctgggattagtatgtggcatcatgatt
catgacattgaatccaatggtacagagtttcaacaactgccctatcaccgcatccttata
atgctgtttctggaactcaatgctcctgaagctatcttagagtctatcaaccttccggtt
ttgatggccttcacacaaacattacacttgctacggcctagcaagtgccctggctttgca
tatgcttggctggagattgtcagccacagggtgttcattggacgtatgttggctatcaca
ccacagcagaaaggatggtccatgtactccatgttgttagcagatctctttaagttcttg
gcaccctttctaaggaatgcagaacttgcaaaaccactgactatgttgtataagggtacc
ttacgtgtgctgttggtccttctccatgatttccctgaattcttatgcgagtatcactac
ggattctgtgatgtcatccctccaaattgcatccagatgcgtaatctcattctctctgcc
tttccacgaaacatgcgccttccagatccctttacacccaatctcaaagtggatatgctg
cctgaaattactatatcacctaagattcacaccactgttgccaacctcattcagcctcca
gatttcaagaagaacttagattcctacttaaaaaacaggacacctgtaacttttctctcc
gacatgcgaacctatctgcagcaggcatctaatgaacctgggatgagctataatatgtct
gtgatgaactccctggtgctgtatgtaggcatgcaggccatttcacagatacatagcaag
ggtctcactccctccatggccacaattgctcattccgcccacatggacattttccagaat
cttggtgttgatttggacaccgaaggtcgatacttgttcctgaatgccattgctaatcaa
ttgcgatatccaaatagccatacacactacttcagctgcactcttcttcatctttttgct
gaagccaacacagaagccatccaagaacaaattactagagtgctgctagaacggcttatt
gtcaatcgtccacatccatggggactacttattacattcattgagctcattaagaaccca
tcatttaagttttggagtcatgaatttgtaaagtgtgccccagaaattgagaagttattt
gaatctgttgcccgctcttgtatggtgcagaaagtttcagctgctcgggaaggagaagcc
tga
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integrated database retrieval system
