Helianthus annuus (common sunflower): 110864689
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Entry
110864689 CDS
T05101
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110864689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110864689
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110864689
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110864689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110864689
NCBI-ProteinID:
XP_021969503
LinkDB
All DBs
Position
6:10694432..10711967
Genome browser
AA seq
2399 aa
AA seq
DB search
MIPLAQRLSTEIRLLLESLNESNHDSVISELSQYVDYGVEGNILLLETCLDHFNVYEKDL
TSTHLEPVVASLFRKLLEKPQFSTVFSTSVRSSAITEEFLDKLSAALQLTTNEKLGFGLA
LTDSENNDIRTAGRNFCMRRIEEICATHASLQTADYVQDALLFLNKSEALSKHVDSFMQL
LSLTQFDKDSGLILAPLLSDEFHNSKLLRYMDFLNEGNENEFDNILAEMEREMNMADLLK
ELGYKCTSDVSLCKDVLSSFSPLTETTVARILGTIIRSDAGLPDHENAFSTFFSAIGRGT
LSDMPSLNSWNTDVLIESIKQLAPGISWIAVIENLDHEGFYVPDEAAFLLLISCYKRASQ
DPFPLAAVCGNVWKNTEGQLSFLKHAVSVPPEVFTFAHCKRQLANVDAVHSHKYQSGHAN
HAWLCLDLLEVLCQLAERGLAKPVRSLLEYPLKHCPEVLLFGMAHVNTSYNFLQLEVSLA
VVPVILKDASASGILLHLWHVNPTFLLRALSDALNTDSDNITRVLDLCQELKIVSPVLEM
VPMSLGIRLAPLASRKELIDLEKWLISNLTTYRDTFFEECVRFLKEVDFAARESSNRLRS
PGNIWSLYMETAPVFLKVLQAHANLLSSNQLSKEMETLHLNVTNNSSRMRNDGGPDSSTT
EVYADDIETEVNAYFQQMFSAQLTVDAMIQMLARFKESSERREQSIFECMIANLFEEYKF
FNRYPDTQLKLAAVLFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALENF
VDRLIEWPQYCQHILQISHLRGAQPELVAFIERALARNSSGHPESDADQHHNSISQPNTE
VAGSSFPLIGSGSSHLVSQIASPIQLQQRNQSYLDERHRSSVTSSNYVKPILNTTGQVSV
ALANEPVNIPKVTAALANEPANVPKPQSVVSSSAALGSSPAFARASRAVTSAKFGSLNIE
TLVAAAERRETPIEAPPSETQDKISFIINNLSIANIEAKAKEFTEILKEPYYAWFAEYMV
MKRASIEPNFHDLYLKFLDKVSSKPLIREIVQATYENCKVLLGSELIKSSSEERSLLKNL
GGWLGRITIGRNHVLLAREIDPKPLIIEAYVKGLMIAVIPFTSKILESCSNSLAYQPPNP
WTMGVLGLLAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVTPSWLLIDKVREVEGNPDFS
NKDIGPAQQPLVGEVKSSKISNLNQVELPVEIGSSSHSGGHPRILPQYAASHHFPAVTLS
EEEKMAALSLSDKLPSAQGLLQAQLPFSVGQLPSSSMDQQVIVNPKLQALGLHMHFQRVL
GISMELAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLA
HVTCKEPLRGSISSQLRNSLQALSGSISSELLEHAVQLVTNDNLDLGCAFIEQAATEKAV
QTIDSELAPQLSIRRKHREGVGSAYFDNSLYTQGYVGVLPEALRPKPGRLSHSQQRVYED
FVRLPWQNQSNQNSNSVPLGPSPSPASGALHRGYGSSTGSVSVSVSGQLNPGIFSSGINA
VAHEDMEPSSVKLLSGSSVHSTTGSGMGAHNFEAVPSSFSSAPAPELHVPESSSVPKELG
VHAQSLSSTSDRIINTTAELSLTTKDAVDKYQFISEELESLIAKDANEAEIQSVIGEVPG
VILRCISRDEAALAVAQKVFQGLYENAANSAHVNAHITMLTAIRDVSKLVFNQLTSWVIY
SDEDRKFNKDITIGLIHRELLNLAEYNIHLAKLLDAGKNKVATEFAISLIQTLVVSDARV
ISELQTVVDVLAKLATRPDAPEALQQLVEIARNPAAGQQKDQKVSTLLVSSRDDTGVVES
SEPDPAAFQEQVSLLFAEWYRIYELPGVNDQLSARFVLQLQQNGLLKADDTSDRFFHRLL
DIAVSHCISSESAVQSHQQAQTLSFLAIDMYASLVFTILKFSTDHGLSKLQLFSKVLAVT
VRFIQKDAEDKKTSFNPRPYFRLFIDWLLDLSTLDSVFEGANFQVLTALATSFHVLQPLK
VPAFCFVWLELVSHRSFMPKLLSGNGQKGWPYFQRLLVDLFQFMEPFLRNAELAETIRFL
YKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAFPRNMRLPDPSTPNLK
IDLLAEINQSPRILSEVDAALKAKQMKSDLDEYLKTRPQGTSFLSELKQKLLLSPSEAAR
AGTRYNVPLMNSLVLYVGIQAIQQLQARTPHGQSMASNASLAIFMVGDIFQTLILELETE
GRYLFLNAIANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDDGVVAGGISDAMH
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttggcgcaaagattatcaactgaaattcggctgttgctcgagagcttgaac
gaatccaatcacgactccgttattagcgaactttctcagtatgttgattacggagtagag
ggaaacattctgcttctagagacatgcttggaccactttaacgtttatgaaaaggacttg
acaagtactcatctggaacctgtagttgcttcactttttagaaaattgttggaaaagcca
cagtttagtactgtattctcaacgtcagtaaggtcatcagcaatcaccgaagaatttcta
gataaattatctgctgctctacagttaacgacaaatgagaaacttggatttggtcttgct
ttgacagattccgaaaataatgacatcagaacggctggaagaaacttctgtatgaggcgg
attgaggaaatttgtgctactcatgcctctctgcaaaccgctgactatgttcaggatgca
ttgctgtttcttaacaaatccgaagccctttctaaacatgtggattcatttatgcagttg
ttatctttgactcagtttgataaggattcggggcttatcttagctcctcttctttcagat
gaattccacaactccaaattattgaggtatatggattttctcaatgagggaaatgagaac
gaatttgacaatattctagcagaaatggagagggagatgaacatggctgacttgttgaaa
gaattgggctataagtgcacatcagatgtatcactttgcaaagatgtgttatcgtcattc
tcacctctaactgaaacaactgtcgctaggatacttgggaccattatcagatccgatgct
ggtcttccggaccacgaaaacgctttttctacatttttttccgctattggtagagggact
ctgtctgatatgccctcgttgaactcttggaacactgatgtccttatagaatcaattaag
caactcgctcctggaatcagctggatcgctgtaattgagaaccttgatcatgagggtttc
tatgtcccagatgaggcggcatttttgctactgatttcttgttacaaacgtgcttcccag
gatccctttccactggctgctgtttgtggcaatgtttggaaaaacactgagggccagctg
tcctttctgaagcatgctgtttctgtgccacctgaagtgttcacgtttgcacactgcaaa
agacaattggcaaatgttgatgcagtccatagtcataagtatcaatctgggcatgcaaat
catgcgtggttatgccttgacctgttggaggtgttgtgccagctagctgagagaggcctt
gcaaagcctgttcgatcactgcttgaatatcctcttaagcattgtcccgaagtgttgcta
ttcgggatggcacatgttaatacatcatataatttccttcaactcgaagtttctttggct
gttgttcctgtgatacttaaagatgcttccgccagtggcattctgctacatctttggcat
gttaaccctacctttttactaagagctttaagtgatgcactcaacacagattcagataat
attaccagggtcttggatttatgccaagagttaaagattgtatctcctgtattggaaatg
gtacctatgtcgctaggtattaggcttgctcccctggcttctcgaaaagaactcatagat
ctggagaaatggctgatttcaaatctaactacttacagagatactttctttgaggagtgc
gtccgattcctgaaggaggtggactttgctgctcgggaatcttcaaatcgtttgcgtagt
ccaggaaacatctggagtctttatatggagacagcccctgtgtttttaaaggttcttcaa
gcacatgcaaacttgctctcctctaaccaactttctaaggaaatggaaactttgcatttg
aacgttacaaacaacagttcaaggatgaggaacgatggtggtcctgattcatcaacaact
gaagtatatgcggatgatatagagacagaggtcaacgcttatttccagcaaatgttctct
gcccaattgactgtagatgcaatgattcaaatgctagctcgattcaaggaatcttctgag
agaagggaacaatccatatttgagtgcatgattgcgaatctgtttgaagagtacaagttc
ttcaacagataccctgacacacaacttaaactcgcagcggttctctttgggttgcttatt
aagaatcaacttgtgacccatctgacacttggcattgccttacgagctgttttagatgcg
ttgcgtaaacctgcagattccaaaatgtttgtatttggtacaaaagcattggagaatttt
gtagatcggttgatcgaatggccacagtactgccaacatatcttgcaaatatcacatcta
cgtggcgctcaacctgagcttgttgctttcattgaaagggcacttgctagaaattcatcg
ggccatccggaatcagatgctgaccaacaccataattctatttcgcaaccaaacactgag
gtggcgggttcatcttttccgttgattggatctggtagttcacatcttgtttctcagata
gcttctccaattcagcttcagcaaaggaaccaaagttatttagatgaaagacacaggtcc
tctgtaacttcctctaactatgtgaagccaatcttaaatacgacaggacaagtttcagtt
gctctagcaaacgaacctgtaaacatccccaaggtaaccgctgctcttgcaaacgaacct
gctaacgtgcctaagccacagagtgtagttagttcttcagcagcgttgggttcatctcct
gcttttgctcgtgcttctcgagccgttacttcagcaaagtttggttctctaaatattgaa
acacttgttgctgctgctgaacgtagagaaactcccatagaggcaccgccatcagaaact
caggataagatttcttttattatcaacaatttatcgattgccaacattgaagctaaagca
aaggaattcaccgaaattttgaaagaaccgtactatgcgtggtttgctgagtacatggtc
atgaaaagagcgagtatcgaaccaaattttcatgacttgtacttgaagttcctggataaa
gtaagctcgaaacctcttatcagagagattgttcaagccacctatgagaattgcaaggtt
cttctaggatctgaacttataaagtccagttcagaagaacgttctttgctgaagaatctt
ggaggttggctcggaaggatcacaatcggtagaaaccatgttttgcttgctagagagatt
gacccaaagcctttaattattgaggcatatgtaaagggtttaatgattgctgtgattccg
tttacttctaagatattggagtcatgttcgaacagtctagcatatcaaccgccaaatcct
tggaccatgggagttctagggttacttgccgaaatatacgcaatgccaaatctcaaaatg
aatctcaagtttgaaattgaggtgttgttcaagaatcttaatgtggatttgaaggaagta
accccgtcatggcttcttatcgacaaagtgagagaagtcgaaggcaatcctgatttttct
aacaaagatattgggccggcccagcaaccattggttggggaagttaaatctagtaaaata
tctaatctaaatcaagtcgaattaccagttgaaattggtagctcatctcattcgggtggt
catccacgaatattacctcagtatgctgcttcgcatcattttcctgcggttactttaagc
gaggaagagaaaatggcagctttaagcttgtctgataagcttccatctgctcaaggactt
ctacaagcacaattgccgttttcagttggtcagctaccgtcatcaagtatggatcaacaa
gtgatcgtcaatcctaagttgcaagctctgggcctgcatatgcactttcagagagtgctt
ggaatttcaatggaactggctatcaaagaaatagtttctagtattgttcagcgcagtgtt
tcaatagcaactcaaacaacaaaagaacttgtgttaaaggactatgctatggagtcggat
gaaagccgtatacacagtgccgctcacttgatggttgcaagtttggcgggaagtctagct
catgtcacgtgcaaggaacctcttcgtggttcaatatcaagtcagctaagaaacagtctt
caggctctgagtgggagtatttcaagtgaactacttgaacacgcggttcagcttgttaca
aatgacaatcttgatttgggctgtgcttttatcgaacaggctgcaaccgaaaaggctgta
caaacaatagatagcgaacttgctcctcaactttcgataagaaggaagcacagagaaggg
gttgggtccgcttattttgataacagtctgtatacacaaggttacgtaggcgtcctacct
gaagccctccgtccgaaacctggccgattatctcattctcaacagcgagtttatgaggat
tttgttcgcttaccatggcaaaatcaatccaaccaaaactcgaactccgtacctcttggt
ccttcaccttcaccagcaagtggtgctctacaccggggttacggttccagcacaggttca
gtatcggtttcggtttcaggtcaactgaaccctggaattttctcatctggtatcaatgct
gtagcacacgaggatatggagcctagctcagtaaaacttctcagtggttcttcggttcat
agcacgacgggcagcggtatgggtgctcacaactttgaggctgttccgtcttcgttttct
tcggcaccagctcctgaactgcacgttccagaatcttccagtgttcccaaagaactggga
gtgcatgcccaatctttgtcttcaacttcggatcgcattataaataccactgcagaactt
tcattgactaccaaagatgcagtggataaataccaatttatctcagaggagctggaatct
ctgatagcgaaggatgctaacgaagctgaaattcagtctgttattggcgaggttcctggg
gtgattctcagatgcattagtcgggatgaggctgcgttggctgtagctcagaaggtcttc
caaggtttatatgaaaatgcagcaaacagcgctcacgttaatgctcatattaccatgtta
accgccattcgtgatgtcagcaagcttgtgttcaatcaactcacgagctgggtaatatat
tccgatgaagatagaaagtttaacaaagatattactatcggcttaattcacagagagttg
ttgaaccttgctgagtataatattcatttggctaagcttcttgatgccggaaagaacaag
gtggcaacagaatttgcaatatcgctcattcaaacactggtggttagtgacgccagagta
atatctgaacttcagactgttgttgatgtgttggctaagcttgcaacaaggcctgatgct
cctgaggcacttcaacagcttgttgaaattgccaggaacccagcagctggacaacaaaaa
gaccaaaaggtatcgactcttcttgtatcaagtagggatgataccggtgttgtggaatct
tctgaaccagatcctgctgcttttcaagagcaggtttctctgctgtttgctgaatggtac
cggatatacgaacttcctggtgtaaatgatcaattgtctgctcgtttcgttctccaactg
cagcaaaatggccttttgaaagccgatgatacatccgaccgtttttttcaccgtcttctt
gatattgctgtatcacattgtatatcttctgagagcgctgttcaatctcatcagcaagcg
caaacattatcttttctagccattgatatgtatgcatcacttgtctttacaatactgaag
ttctctactgaccatggattaagcaagctgcaacttttctcgaaggtgttagcggtgact
gtgagattcattcaaaaggatgctgaggataagaaaacatcattcaaccctaggccgtat
tttaggttatttattgattggctacttgaccttagtactcttgattcagtctttgagggt
gcaaactttcaggttttgacagctctagcaacttcctttcatgtgctacagcctttgaaa
gttcctgcattttgctttgtatggcttgagctagtaagtcacagaagtttcatgccgaaa
ttactgagcgggaatggtcagaaggggtggccgtatttccaacgtttactggtagacttg
ttccagtttatggagccgtttttgaggaatgctgaacttgccgaaacgattcgttttctg
tacaaaggcacactaagagtgcttttagtgttgcttcatgattttccggagttcctttgt
gattatcatttcagtttctgtgatatcattcctccaagctgcattcagatgagaaatatc
gtacttagtgcgtttccacgcaacatgaggctacccgacccttccacccccaacttgaag
attgacctgctggctgagattaatcaatcgccacgcattctgtcagaagttgatgcagct
ttgaaagccaagcaaatgaaaagtgacttggacgagtatctcaagacgaggccacaaggg
acttcgtttctttcagaattaaagcaaaaactgcttctttcgccaagtgaagctgcaagg
gccggaacacgatataacgtgcctttgatgaactcccttgttctttatgttggaatacag
gcgatccagcagctacaggcgagaacaccacatggacagtcgatggccagtaatgcatca
ctagctatctttatggtgggcgacatattccaaacgttgatactagagctagagactgaa
gggcgttacctctttttgaacgcgattgctaaccaattgcgttatcccaacaaccacaca
cattacttctcatttatccttctttacttgttttccgagtctaaccaggaggctattcag
gaacagatcactagagttttattagaacggttgattgttaaccggccacacccttggggg
cttctgattactttcattgagcttatcaagaatccccgttacaacttctggagccgatct
ttcacaaggtgtgctcctgagattgagaaactctttgaatcagtgtcaagatcgtgtgga
ggtcctaagcccgtagatgacggtgtggttgctggaggaatatctgatgccatgcactag
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integrated database retrieval system
