Helianthus annuus (common sunflower): 110919828
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Entry
110919828 CDS
T05101
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110919828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110919828
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110919828
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110919828
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
Not1
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
110919828
NCBI-ProteinID:
XP_022019772
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All DBs
Position
16:155118712..155125918
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AA seq
1293 aa
AA seq
DB search
MTTCLDHFDIYEDDLESTDLEPTIGSLFRNLMRKHHFSTAFSGLMRDRLVTENFLNNLST
ALKLSVCEKVGFGFNLLDAENYDIRTEGRKFCMSQCKALCNIRDKLDTVEADVQDVLSFL
EQSDVFSKLIDSFKVMILQVWLNANSRLILADKVDDTVLLSHINFHINVPKEIPTEMRAS
FFAKMLGYWNRLSYRCGELRAEGFQLRADVAFSILMSCYRLACQAPFPLAVVLGNVWENK
ESQLLFLKHAVSSPPEVFTFAHCKKQLECVDHEFQADHATQPWLCLDLLEVLCQLAENGH
TASVWSMMEFPLKHCPEVLLLGIAHVITPYNLLPHEVAKSVLPMLLEDSSKSGILLRVWG
VNPLLLSRALNHVLVLDLENMNKVVDLFQELEILSSVLDLVPMHLGIKLASLASKKEFVD
LVEWLGTNLSAHEDDFYEECLRFLKEVEDNAGDIWNIYKETAPAFTKALKRQTDVLASKE
LSKKMESLYVTCMQDGSKKENIDDFDSSTSESYADHITTKAPLPQPMQESSSPSTGSTSR
QGPVTSAMFGGAISIDTLLAASEDRGTPVEVPPSETQDKIMFLINNLSPANIEEKAKEFT
DILAERYYPWFAQYLVMRRVGIEANFHSQYINFLEKTRSKQLNNEIVQATYENCKVLLRS
DLIKSSVEERKLLKNLGSWLGKLTIGRNQPLLAKHIDPKSLIAEAYEKGLMIGVIPFISK
ILELCQSSVAYQLPNPWTTAILGLLVEVYSMPNLKANLTFEIEVLFKNLHVDIKEFKPTT
LLEEKSRVTEGNPDFSQPKIVEVKSTSRSAVNQVVLPADVAGPSYQPTAPASNIPDFKSV
LKTHVLGLLPVAMNKAIEQLVSTVVERSVSIASQTAIELVLKEYINDPDEIYVDNVSSFM
VAFLAGSLSSVTCKEPLRVLTSTHLRNSTRGLNVPTEFLEDAMKCVIDENLHLGWASIEK
NATEKGLATVKREITQQLSIRKKQKEDSESFINKTVEPSYTTDVASSQVSVFLAEWYQMR
AHSGVSDAVCAPYVQELYQNVLSKSDDMSNRFFGILLELVISHYRPFEINPSPMQFHQQD
TSSFLAIDIYTDVVFSVLKFYPDNEKSTKYSLLLKVLTVMVGFITKDANERKSTFNPKPY
FRIFNNILNRLNTVNSVILDADFHVLAGLAQSFHALQPAKVPEFSFAWLELVTLTDFMPK
LLNQDNHQGWPYFKCLVIDVLRYMEPILRGGEVTEPVHVLYNYTRRMLLVLSHDFPEFIC
CYRSSLYDIIPPHCIELRNIILSTVPHNMRTPI
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgacgacatgcttggaccactttgatatttatgaagacgacttggagagtacagatctc
gaaccaacaatcggttcactcttcagaaatttgatgcgcaagcatcactttagtacagca
ttctcaggtctaatgagagatagattagtcacagaaaattttcttaacaatttatcaacc
gcactgaagttatcagtgtgtgaaaaagttggtttcggctttaatttattagatgcagaa
aactatgacatcagaactgagggaagaaaattctgtatgtcacagtgtaaggcactatgt
aatattcgggataaattagatactgttgaggccgatgttcaagatgtactcagctttctt
gaacaatcagatgtattttccaaactaattgattcatttaaggtgatgatactacaagtt
tggttaaatgcaaattcccgtttgatcttagctgacaaagtcgatgatacagtgttattg
agccacattaatttccacattaatgtccccaaagaaattccgacggaaatgcgtgcttcg
ttcttcgcgaaaatgctaggctactggaatcgactgtcttaccgttgtggagaacttcga
gcagaaggatttcagcttcgtgctgatgtggcattttcaattttaatgtcttgctataga
ctcgcgtgtcaggctccatttccacttgctgttgttttgggcaatgtatgggagaacaaa
gaatctcagttgttgtttctgaagcatgctgtttcatcaccacctgaagtattcacattt
gcacattgcaaaaaacaactggaatgtgtcgatcatgagtttcaagctgaccatgctact
caaccgtggttatgcctcgacttactcgaggtgttatgtcagttagctgaaaacggccat
acagcttcggtttggtcaatgatggagtttccgcttaagcactgccctgaagtgctttta
cttgggattgcccatgttattacaccatacaatctcctcccgcatgaagttgctaaatca
gttctacctatgctacttgaagattcttccaagagtggaatattactccgtgtgtggggg
gtcaatcctttgttattatcaagagcgttaaatcatgtcctcgttttggatctagaaaac
atgaacaaagttgtggacttgtttcaggagttagagatcctatcatctgttctggatcta
gtacccatgcatctgggaatcaaactggcgtctcttgcttctaagaaagaattcgtagat
ttggtggagtggttgggcactaatttaagtgcacatgaagatgatttttatgaggagtgc
cttagattcctaaaggaggtcgaagataacgctggtgatatctggaatatatacaaggag
acagcacctgcatttacaaaggcccttaaacgacaaaccgacgtgctcgcatccaaggaa
ctttccaagaaaatggaaagtttgtatgtgacatgcatgcaagatggttcaaaaaaggag
aacattgatgattttgattcttcaacatccgagtcatatgcagaccacataacgacaaag
gccccgttacctcagccaatgcaagaatcatcgtccccttcaaccggatctacttcaaga
caaggccccgttacctcagccatgtttggtggtgcaataagcatagatacattgctagct
gcttccgaggataggggaacccccgtagaggtcccaccatcggaaactcaggataaaata
atgttcctaattaacaatctgtcacctgctaatattgaagaaaaggcaaaagaatttacc
gatattctagcagaacggtattatccatggtttgcacagtacttggttatgagaagagtg
ggcatagaagccaattttcacagtcaatatatcaactttcttgaaaaaacaagatcaaaa
cagctgaacaatgagattgttcaagctacttatgagaattgcaaggttcttttaaggtcc
gatcttataaagtccagtgtcgaagagcgtaaattgctgaagaatcttggaagctggctc
gggaagcttacgattggtagaaaccaacccttacttgctaaacatatcgatccaaaatct
ttaatcgcagaggcttatgaaaagggtttaatgattggagtgattccgtttatctccaag
attttggaattatgccaaagcagtgtagcatatcaactgccaaatccttggacaacggct
attcttggtttactcgtcgaagtttattcaatgcctaatctcaaagcaaatctcacgttc
gaaatagaagtattgttcaagaatctacatgtagatataaaggaattcaagccaacaact
cttcttgaagaaaagtctagggtgaccgaaggaaaccctgatttttctcaaccgaaaatt
gttgaagttaaatctacatcgagaagtgcggtaaatcaggttgtattaccggctgacgtt
gcaggtccatcttatcagccgaccgcaccagcctcaaatattcccgatttcaaatcggtt
ctaaagacgcatgtccttggtttgcttccggtggctatgaataaggctattgaacaacta
gtttctaccgttgtagagaggagtgtttctatagcatctcaaacagcaattgagcttgtg
ttaaaggagtacattaacgacccggatgagatctatgttgacaatgtatcaagttttatg
gttgcgttcctagctggaagtctgtcttctgtcacctgcaaggaaccattgcgtgttttg
acgtccactcatctaagaaactccacaaggggtttgaatgttccaactgaatttcttgaa
gatgccatgaaatgtgtaattgatgaaaaccttcatttgggttgggcatcaattgaaaag
aatgcaacagaaaagggactagcaacagtaaaaagggaaatcactcagcaactttcaatt
aggaagaagcaaaaagaagattccgagagctttattaacaaaactgtggaaccttcatat
actacagatgttgcatcgtctcaggtttccgttttccttgccgaatggtaccagatgcgt
gctcactctggtgtaagtgatgcagtttgtgctccttacgtccaagaactttatcaaaac
gtgttgtcaaaatctgatgatatgtcaaaccgttttttcggcattctactggaactcgtt
atatcacactatcgaccttttgagatcaatccaagccctatgcaatttcaccaacaagac
acgtcatctttccttgccattgatatatacacagatgttgtcttttcggtcttgaagttt
tatcctgataatgaaaagtcaaccaagtactctcttttgttaaaggtgttaacggttatg
gtgggattcataacaaaggatgctaacgaaaggaaatcaacattcaatcccaagccatat
tttcggatattcaacaacattttgaatcggcttaatacagtgaactcggtcatccttgat
gcagattttcatgttttggcaggtcttgcacagtcattccatgcattacagcccgcaaaa
gttcctgaatttagctttgcatggcttgagctggtgacacttacagatttcatgccaaaa
cttctcaatcaagataatcatcaaggatggccatattttaagtgtcttgtaatagatgtg
ttgcggtacatggaacccattttaaggggtggtgaagttactgagccggttcatgttctt
tacaattacacacgtcggatgttgttggtgctgagtcatgatttcccagagttcatttgc
tgctatcgttccagtttatacgacattattcccccgcactgcattgagttgcggaatatt
atcctaagtacagtgccccacaatatgaggacaccaatttga
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