Helianthus annuus (common sunflower): 110937806
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Entry
110937806 CDS
T05101
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110937806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110937806
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110937806
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110937806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF6183
Motif
Other DBs
NCBI-GeneID:
110937806
NCBI-ProteinID:
XP_022035955
LinkDB
All DBs
Position
4:complement(196951286..196966458)
Genome browser
AA seq
2403 aa
AA seq
DB search
MIPLAPRLSTEIRLLLDTLNDSNSDSVLRELSQYVEYGTEGSILLLETCLDHFKVFEKDL
KSTHLEPVVASVFRKLLEKPQFSTVFSMSVRPTAITEEFLVNFSVALHLSAHEKLGFGLA
LTDSENNDIRMAGRNFCMRQIEELCAASASLQTADYVQDALLFLNKSEVLSKHVDSFMQL
LSLVRFDENSGFILAPFLSDELQDSKLLRNMDFLNEGNENEFDAILAEMEREMNMADMLK
ELGYKCTLDVSLCKDLLSSFSPLTEVTVARILGTVIRSDAGFQDHENAFYTFYSALGRGN
LSDMSSPNSWNTDVLVESIKQLAPGISWTAVIENLDHEGFYVPDEAAFSLLISCYKHASQ
DPFPLAAVCGNVWRNTEGQLSFLKYAVSAPPEVFMFAHCKRQLANVDAINSQKMQSGHAN
HAWLCLDLLEVLCQLAERGLAKSVRSLLEYPLKHCPEVLLYGMAHVNTPYNLLQHEVSLA
VVPVILKDASVFGILLHLWHVNPPFLLRALNDALSIDSDNIIRVLDLCQELKIISPVLDM
VPMFMGIRLAALASRKELVDLEKWLSSNLSTYKYTFVEECLRFLKEVEFGSQESSNRLHN
SGNIWSFYMETTPVFLKVLQTHTDLLSANQLSKEMERLNLKFTNNSSRMRNNGAPDSSTP
EVYADDIETEANSYFHQMFSAQLTVDAMIQMLARFKESSDRREQSIFECMIANLFEEYKF
FNKYPDRQLKLAAALFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALEKF
VDRLIEWPQYCQHILQISHLRGTHPELVAFIERALTRNSSGHPDSDAAAYNPAADQHHNS
IPQPNVEVAGSSLSLIGSGGTQFSSQISSPIQLQQRSQSYIDERHRASVTSSYMKPNITT
TGQASVAPPNDPVNIPKPHSVASSSAALASTPAFARPSRAVTSARFGSALNIETLVAAAE
RRETPIEAPPSETQDKISFIINNLSAANIEAKATEFTDVLKEQYYAWFAQYMVMKRASIE
PNFHDLYLKFLEKANSKPLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKI
TIGRNHVLRANQIDPKALIIEAYEKGLMIAVIPFTSKILESCSNSLAYQPPNPWTMGVLA
LLAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVTPSSHLIDKVREIEGNPDFSNKDVGTA
QQPIVGEVKSNMISTLNQVELPVEVGSSSHSAGHSRILSQYAAPHHIPAVTLSEDEKMAA
LGLSDKLPSAQGLLQAQLPFSVGQLPSSNMDQQVIINPKLQALGLHVPFQRVLGYTMEVA
IKEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRNNLQALNLNVATELLEHAVQLVTNDNLDLGCALIEQAATEKAVQTIDSEL
APQLSMRRKHREGPYFDTSLYTQGHVGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQS
NQNSNAGPLGPSAPPVSGALHRGYGSGSGSVSGQMNMNPDIFSSGINAVAHSLDAEDMES
NSVKLLSGSAVHSSMGGGMGPHTFENEAVLSSFSSVSAVPELHIPEASVVSKDPGAFAQP
LPSPLASDRITSTTTEPSLTTKDAVDKYQFISEELESLIAKDAKEAEIQAIIGEVPGVIL
RCISRDEAALAVAQKVFQGLYENAANAAHVGAHLAMLAAIRDVSKLVFNQLTSWVIYSDE
DRKFNKDITVGLIRRELLNLAEYNNHMAKLLDAGKNKVATEFAISLIQTLVASDARVISE
LHSVVDVLAKLATRPDAPEALQQLVEIARNPKDDFNRLQKDKKVASHTVASRDDTGVLES
SEPDPAAFQEQVSLLFAEWYKIYELPGVNDQLTARFVLQLQQNGLLKADDTSDRFFRRLL
DIAVSHCISSEGAVQSHQQTQALSFLAIDMYASLVFSILKFSAADHGLSKMPLLSKVLAV
TVRFIQKDAEEKKTSFNPRPYFRLFIDWLLDLSTLDPVFEGASFQVLTALATSFHALQPL
KVPAFSFVWLELVSHRSFMPKLLSGNGQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVRF
LYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAFPRNMRLPDPSTPNL
KIDLLAEISQSPRILSEVDAALKAKQMKSDVDEYLKTRPQGTSFLSELKQKLLLSPSEAA
RAGTRYNVPLMNSLVLYVGMQAILQLQARTPHGQSMASNASLAIFLVGAALDIFQTLILE
LETEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDDGVVAGGISD
TMH
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttggcgccaagattgtccactgaaattcggctcttgctcgacaccttgaac
gattccaattccgattccgttcttcgggaactctctcagtatgttgagtatggaactgag
ggcagcattctgcttctggagacctgtttggaccacttcaaagtttttgaaaaggacttg
aaaagtactcatctggaacctgtagttgcgtcagtttttagaaaattgttggagaagccg
cagtttagtactgtattctcaatgtcagtaaggccaacagcaatcactgaggaatttctg
gttaatttttctgttgctctacatttatcggcacatgagaagcttggatttggtcttgct
ttgacagattcagaaaataatgacatcagaatggctggaagaaatttctgtatgaggcag
attgaggaattatgtgctgccagtgcctctctgcaaactgctgactatgttcaggatgca
ttgctgtttcttaataaatccgaagtcctttctaaacatgtggattcgtttatgcagttg
ttatctcttgttcggtttgatgagaattcagggtttattttagctcctttcctttcagat
gaactacaagactccaagttattgaggaatatggattttctcaatgaaggcaatgagaat
gaatttgatgctatcctagcagaaatggagagggagatgaacatggctgatatgttgaaa
gaattgggctataagtgcacattagacgtgtcactttgcaaagatctgttatcttcgttc
tcacccctaaccgaagtaactgtcgctaggatacttggtacagttattcgatctgatgcc
ggttttcaagaccatgaaaatgcgttctacacattttattctgctcttggtagagggaat
ctgtctgatatgtcttcaccaaactcttggaacactgatgtccttgtagaatcaattaag
cagcttgctcctggaatcagctggaccgctgtaatcgagaaccttgatcatgagggtttc
tacgttccagatgaggcagcattttcactattgatttcttgttacaaacatgcatcccag
gatccctttccactggctgctgtttgtgggaatgtttggagaaacaccgaggggcagctg
tcttttcttaagtatgccgtttctgcaccacctgaagtattcatgtttgcacactgcaaa
cggcaattggcaaatgttgatgcaatcaacagtcaaaagatgcaatctggtcatgcaaat
catgcatggttatgcctcgaccttttggaggtcctgtgccagttagctgagagaggcctt
gccaaatctgttcgatcactgcttgaatatccccttaaacattgccctgaagtgttgcta
tatgggatggcccatgttaatacaccatataacctccttcaacatgaagtttcgttggct
gttgttcctgtgatactgaaagatgcttctgtgttcggcattctgctccatctttggcat
gttaacccaccctttttgttgagagctttaaatgatgcattaagcatagattcagataac
atcataagggtcttggatttgtgccaggagttaaagattatatctcccgtattggatatg
gtacctatgtttatgggcattaggctggcagccctggcttctaggaaagagctcgtagat
ctggagaagtggttgagctcaaatttaagtacttacaaatatactttcgttgaggagtgc
ctccgattcctgaaggaggtggagtttggttctcaggaatcttcgaatcgtttgcataat
tccggaaacatctggagtttttatatggagacaactcctgtgttcttaaaggttcttcaa
acacataccgacttgctctcagctaaccaactttctaaggaaatggaaagactgaatttg
aagtttacaaacaacagttcaaggatgaggaacaacggagctcctgattcatcaacacct
gaagtatatgcagatgatatagagacagaggccaactcttatttccatcaaatgttctct
gctcagttgacggttgatgctatgattcaaatgctagcccgattcaaggaatcttctgat
agaagggaacaatccatatttgagtgcatgattgcaaatctgttcgaagagtacaagttt
ttcaacaaataccctgatagacaacttaaactcgctgcagctctctttgggttgcttatt
aagaatcaactggtgacccatctgacacttggtatcgccttacgagctgttttggatgca
ttgcgtaaacctgcggattccaaaatgtttgtttttggtacaaaggctctggagaagttt
gtggatcgtctgattgaatggccacagtactgtcagcatatcttacaaatatcacatcta
cgtggcactcatcctgagcttgttgctttcatcgaaagggctcttactagaaattcgtcc
ggccacccagattcagatgcagcagcctacaatcctgccgctgatcaacatcataattct
attccacaaccaaacgttgaggtggcgggttcgtctctctcattaattggatctggtggt
acacagtttagttcacaaatatcttctccgattcagcttcagcagaggagccaaagctat
atagatgagagacacagagcctctgtaacgtcttcctatatgaagccaaacataactacc
acaggacaagcctcagttgctccaccaaatgatcctgttaatatacctaagccacacagt
gttgctagttcctcagcagcattggcttccactcctgcttttgctcgtccttctcgagct
gttacttcagcaaggtttggttctgctttaaatatagaaacacttgtcgctgctgctgaa
cgcagagaaactcccatagaggcgccaccatctgaaactcaggataagatttcttttatt
atcaataatttatcagctgccaacattgaagctaaagcaacggaattcacagatgttttg
aaagagcagtactatgcctggtttgctcagtacatggtcatgaaaagggcaagcattgaa
ccaaattttcatgacttatatttgaagttccttgagaaagccaactcgaaacctctaaac
aaagagatcgttcaagccacctatgagaattgcaaggttctcttaggatctgaacttata
aaatctagttcagaagaacgttcgttgctgaagaatcttggaggctggctggggaagatc
acaattggtagaaaccatgtactgcgtgctaatcagattgatcccaaagctttaattatc
gaggcgtacgaaaaggggttaatgattgcagtgattccatttacctccaagatattagag
tcatgctcaaacagtctagcatatcaaccacctaatccttggaccatgggagttcttgca
ttacttgctgaaatctatgcaatgcctaatctcaaaatgaatctcaagtttgaaattgag
gtattgttcaagaatcttaatgtggatttgaaggaagtaaccccatcatctcatcttatt
gacaaagtgagggagattgaaggaaaccctgatttttctaacaaggatgttgggacagct
cagcaaccaatcgttggggaagtgaaatctaatatgatatcgactctaaatcaagtcgaa
ttaccagttgaagttggtagttcttctcattctgctggtcattcgcgtatattatctcag
tatgctgctccacaccatattcctgctgttactttaagtgaggatgagaagatggcagct
ttaggcttatcggataagcttccatctgctcaaggacttctacaagcacaattgcctttt
tcagttggccagctaccgtcatcaaatatggaccaacaagttattatcaatcctaagctc
caagctttgggtctccatgtgcctttccagcgtgtgcttggatataccatggaagtggct
atcaaagaaatagtttctagcattgttcagcgtagtgtttctatagcaactcaaacaaca
aaagaacttgtcttaaaggactatgctatggagtcagatgagagccgtatacatagtgca
gctcacctgatggttgcgagtttggctggaagtctagctcatgtcacgtgcaaggaacct
cttcgtggttcgatatcaagtcagctaagaaacaatcttcaggctctgaatttgaatgtt
gcaactgaactgcttgaacatgcagttcaactcgttactaatgataacctcgacttaggc
tgtgcattaatcgaacaggctgctaccgaaaaggctgtacaaacaatagatagtgaactt
gcacctcaactttcgatgagaaggaagcacagagaagggccctattttgatacaagccta
tatacacaaggtcatgtaggtgttctaccagaagccttgcgtcctaaacctggccgacta
tcccattctcaacagcgggtttatgaggactttgttcgattaccatggcagaatcaatcc
aaccaaaattcgaatgctggaccacttggcccttcagctccaccagttagtggtgctcta
caccggggttatggttccggttcaggttctgtttcaggtcagatgaacatgaaccctgac
atcttctcatctggtatcaatgctgtagcacactccttggatgctgaagatatggagtct
aattcagtaaaactccttagtggttccgccgtacatagctcaatgggtggtggtatgggt
ccgcacacctttgagaatgaagcggttctctcttcattttcttccgtttcagctgttcct
gaactgcacattccagaagcttctgttgtctccaaagacccgggagcatttgcacagcct
ttgccttcacccttagcttcagatcgcattacaagtactaccacagaaccttcattgacc
accaaagacgcagttgataaataccagtttatctcagaggagctggaatctttgatagca
aaggatgctaaagaagctgaaattcaggctattattggcgaggttcctggggtgattctt
agatgcattagtcgggacgaggctgcgttagccgtcgctcagaaggtcttccaaggctta
tatgaaaatgcagcaaacgccgctcatgttggggcccatcttgccatgttagctgccatt
cgtgatgtcagcaagcttgtgttcaatcaactcactagttgggtaatatattccgatgaa
gataggaaattcaacaaagatattaccgttggcttaattcgcagagagctgttgaacctt
gctgagtataataatcatatggctaaacttcttgatgccggaaagaacaaggtggcaaca
gaatttgcaatctctctcatccagacattggtggctagtgacgccagagtaatatctgaa
cttcatagtgttgttgatgtattagctaagcttgcaacaaggcctgatgctcctgaggcg
cttcaacaacttgttgaaattgctaggaaccctaaggatgatttcaacagactacaaaaa
gacaaaaaggtggctagtcatactgtagcaagcagggatgacaccggtgttctggaatct
tctgaaccagatcctgctgctttccaagagcaggtgtcactgctatttgccgaatggtac
aagatatatgaactccctggtgtgaatgatcaattgactgctcgttttgttctacaactt
caacaaaatggccttttgaaagccgatgatacgtcagatcgcttttttcgccgtcttttg
gatattgctgtatcacactgtatatcttctgagggcgctgtccaatctcatcagcaaaca
caggcattatcttttcttgccattgatatgtatgcatcacttgtcttttcaatactgaag
ttctctgctgctgaccatggattaagcaagatgccgcttctgtcaaaggtgttagcagtg
acagttagattcattcaaaaggatgcagaagagaagaaaacgtcattcaaccctaggcct
tacttcaggttattcattgattggctgcttgaccttagtacccttgatcctgtctttgaa
ggtgcaagctttcaggttttgacagctctagcaacttccttccatgctctacagccattg
aaagttcctgcattcagctttgtatggcttgagctagtaagccatagaagtttcatgcca
aaactattgagcggaaatggtcagaaggggtggccgtatttccaacgtttactggtagac
ttgttccagtttatggagcctttcttgaggaatgctgaacttggcgagccggttcgtttt
ctttacaaaggcacactgagagtgcttttagtgttgcttcacgatttcccggagttcctt
tgtgattatcattttagtttctgcgatatcattcctccaagctgcattcagatgcgaaat
atagtacttagtgcatttccgcgcaacatgaggctacctgacccttcaacccccaacttg
aagattgatctgctagcggagattagccaatcaccccgcattctatcggaggttgatgcc
gccttaaaagccaagcaaatgaaaagtgacgtggatgagtatctcaagacaaggccacaa
gggacttcatttctttcggaattaaagcagaaacttcttctttcaccaagtgaggctgca
agggcgggaacacgatacaatgtgccgttgatgaactctctcgttctttatgttggaatg
caggcgatcctgcagttgcaggcaagaacgcctcatggacaatcgatggcaagtaacgca
tcacttgccatcttcttggtgggtgctgctttggacattttccaaacactaatattggag
ctggaaaccgaaggacgctacctctttttgaacgcggttgctaaccaattgcgttatccc
aacaaccacacacattacttttccttcattcttctttacttgttttctgagtcaaaccag
gaggccattcaagaacagatcaccagagttctattggagcggttgattgttaaccgacca
cacccgtggggccttctaatcactttcattgagcttatcaagaatccgaggtacaacttc
tggagcagatcgttcacaaggtgtgctcctgagattgagaaactgtttgaatcggtttca
agatcgtgtggagggccgaagcctgtggatgacggtgtggttgccggagggatatctgat
accatgcactaa
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integrated database retrieval system
