Halomonas sp. NyZ770: LG409_00920
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Entry
LG409_00920 CDS
T10914
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LG409_00920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hany03021
]
LG409_00920 (rpoB)
03400 DNA repair and recombination proteins [BR:
hany03400
]
LG409_00920 (rpoB)
Enzymes [BR:
hany01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LG409_00920 (rpoB)
Transcription machinery [BR:
hany03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LG409_00920 (rpoB)
DNA repair and recombination proteins [BR:
hany03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LG409_00920 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
UDM07511
LinkDB
All DBs
Position
199517..203593
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMSTEEILDEFFETSTFHIEKSG
FSVELVPSRLRGETATFDIKDADGEIIVEEGRRITQKHIRQLEKAGLERLEVPMEYLFGK
TLAKDQIDTRTGELICPCNTEITPEVLERMAQGGITLIETLYTNDLDCGSFVSDTLKLDT
TGSQLEALVEIYRMMRPGEPPTKEAAETLFHNLFFTEDRYDLSGVGRMKFNRRLRRDSDV
GSGVLDRKDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVN
ACQVTDDIVHLSAIEEGDFVIAQASAAVDESGKLIDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
SVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGPEEITSDIPNVGESALGKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQMQLDE
VRKDLQETYRIAEDATFERLKRTLEGQAVNGGPNLKKGDVLSETYLDELPRQQWFKLRMQ
DEAYNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEAMLRDARGQQVAEIRDFLGQVYNTPGTRMEDIDSLTDEEIIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMALYDGRTGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacttgctggccatccagcttgattcctactacgactttctccag
caggatcgttcgcctgatgagcggcacgaagtgggtctgcacgcggcattcaagtccgtg
ttcccgatcgagagcttctcgggtaacgctgcgctggaatatgtcagctatcgcttcggt
acgccggcgttcgatgtgaaggagtgtcagctgcgtggcgtgacctactccgccccgctg
cgcgtcaaggttcgcttgatcatctatgatcgcgactcttcgaacaaggctatcaaggat
atcaaagagcaggaagtctacatgggggagatccccctgatgaccgagaacggtaccttc
gtcatcaacggtaccgagcgggtaatcgtttcccagctccaccgctcacccggtgtgttc
ttcgatcatgacaagggcaagagccactcttccggcaagctgctctactctgctcgcgtg
attccttaccgtggctcctggctcgacttcgagttcgatccgaaagacaacgtcttcgtg
cgtatcgaccgtcgtcgcaagctgccggcttccgtgctgatgcgcgcgctgggcatgagc
accgaagagatcctcgacgagttcttcgaaaccagtactttccatatcgaaaagtctggc
ttctccgtggagctggtgccttcgcgcctgcgcggtgaaaccgccaccttcgacatcaag
gatgccgatggtgagattatcgtcgaagaaggccgtcggattacccagaagcacatccgc
cagctggaaaaagcgggtctggagcgtctggaagtgccgatggagtacctgttcggcaag
acgctggccaaagaccagatcgacaccaggacgggcgagctgatctgcccgtgcaacacc
gaaattaccccagaagtgctggagcgcatggctcagggcggtattaccctgatcgaaacg
ctctacaccaatgacctggactgcggttccttcgtttccgacacgctgaagctggacact
accggctcgcagctggaagcgctggtcgaaatctaccgcatgatgcgtcctggcgagccg
cccaccaaggaagccgccgaaacgctgttccacaacctgttcttcaccgaagaccgctac
gacctgtcgggcgtgggccggatgaagttcaaccgtcgtctgcgtcgtgactccgacgtg
ggctccggtgtattggaccgcaaggacatcctcgatgtgctgcgcgaactgatcaacatc
cgtaacggcttcggtgacgtcgacgatatcgaccacttgggtaaccgccgtatccgctgc
gtcggcgaaatggccgagaaccagttccgtgtaggtctggtgcgcgtcgagcgtgcggtc
aaagagcgtctgtccatggcggagagcgaaggcctgatgccccaggacctgatcaacgcc
aagcccgtggcggcggcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctgtccgaggtgactcacaagcgtcgtgtatcggcactcggcccg
ggcggtctgacccgtgagcgcgcaggcttcgaagtccgtgacgtacacgccacgcactat
ggtcgtctgtgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactcgctg
gccacctacagccataccaacagctatggcttcctggaaacgccgtaccgcaaagtgaat
gcctgtcaggtcactgacgacatcgttcacctgtcggcgatcgaggagggcgacttcgtt
atcgcccaggcgtcggcggcggtagatgaatctggcaagctgatcgatgacctggtgcag
gtacgccaccgcggcgaaaccaccttcatgcgtcctgagcaagtgacgctgatggacgtg
tctccgcgtcaggtggtctcggtcgcagcggccctgatcccgttcctggagcacgatgat
gccaaccgcgccttgatgggtgcgaacatgcagcgtcaggccgttccgaccctgcgtgcc
gacaagccgctggtcggtactggcatggagcgcttcgtggcccgcgactccggcgtatgt
gccgtggcgcgccgtggcggcgtcatcgactccgtggatgcgcgtcgtgtggtggtgcgg
gtcaatgaagatgagatcatcggcggtgaagccggcgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgtatgaaccagcgccccatcgtgcggcctggcgac
agcgtggcacgcggcgatattctggccgacggcccgtctgtcgacatgggtgatctggcc
ctgggccagaacatgcgcatcgcgttcatgccctggaacggttacaacttcgaagactcc
atcctgctctccgagcgtgtcgttcaggaagatcgcttcaccacgattcacattcaggaa
ctgacctgtgtgtctcgtgacaccaagctggggccggaagagatcacctccgatatcccc
aacgtcggtgaatcggcgctgggcaagctggacgaagcgggcgttgtgtacatcggtgct
gaagtcggccccggcgatattctggtgggtaaggtaacgccgaaaggtgaaacccagctg
acgccggaagagaagctgctgcgcgccatctttggtgagaaagcctctgacgtgaaagac
acctccctgcgcgcccccaccggcatgaagggtacggtcatcgatgttcaggtgttcacc
cgtgacggcgtcgagaaggactcccgtgccctgtccatcgagcagatgcagctggacgaa
gtacgcaaggacctgcaggagacctaccggatcgccgaagacgcgacgttcgagcgtctg
aagcgcaccctggaaggtcaggccgtcaacggtggcccgaacctgaaaaaaggcgacgtg
ctgagcgagacgtacctggacgaactgccccgtcagcagtggttcaagctgcgcatgcag
gacgaagcctacaacgaactgctggcccaggccgatgagcagctcgaaaaccgccgtaaa
gagatggacgagcgtttcgaagacaagaaacgcaagctgacccagggcgacgacctcgcg
ccgggcgtgctgaaaatcgtcaaggtctacatggcggtcaagcgtcgcatccagccaggc
gacaagatggccggtcgtcacggtaacaagggtgttatctccgcgatcatgcccatcgaa
gacatgccgttcgacgagaagggcgagccggtggacgtggtactgaacccgctgggcgta
ccgtcgcgcatgaacgtcggtcagatcctggaaactcacctgggcatggcggcacgtggc
ctgggcgtcaagatcgaggccatgctgcgtgatgcgcgtggccagcaggttgcggaaatt
cgtgacttcctggggcaggtctacaacacgcctggcacccgcatggaggacatcgattcg
ctgaccgacgaagaaatcatcgcgctggcgaaaaacctcaaaggcggtgtgcccatggcc
acgccggtgtttgacggtgccaaagagcacgagatcaagcacctgctgaagctggcagac
attccggaatccggtcagatggcgctgtacgatggtcgtaccggcgatgccttcgaccgc
ccggtcaccgttggctacatgtacatgctgaagcttaaccacctggtagacgacaagatg
cacgcgcgttctaccggttcttactcgctggtgactcagcagcccctgggtggtaaggca
cagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagcctacggcgct
gcgtacacgctacaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtacaagaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactcgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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integrated database retrieval system
