Halioxenophilus aromaticivorans: R50071_07930
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Entry
R50071_07930 CDS
T10756
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
haro Halioxenophilus aromaticivorans
Pathway
haro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R50071_07930 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haro03021
]
R50071_07930 (rpoB)
03400 DNA repair and recombination proteins [BR:
haro03400
]
R50071_07930 (rpoB)
Enzymes [BR:
haro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R50071_07930 (rpoB)
Transcription machinery [BR:
haro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R50071_07930 (rpoB)
DNA repair and recombination proteins [BR:
haro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R50071_07930 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BFM05589
LinkDB
All DBs
Position
894356..898444
Genome browser
AA seq
1362 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYEKFTQANAASAESRLDIGLHAAFKS
VFPIVSYSGNAALEYVSYQLGKPVFDVNECILRGVTYAVPLRVKVRLIIYDKESSNKTIK
DIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSAR
VIPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGFSSQEMLGMFFETDEFSVQDT
GEYTLKLIPSRLRGDVTSFDIKDQSGKVIVEEGRRITARHIRQMEKSGVEELNVPVVYMV
GRSLAEDLINEQTGEVLLECNTELTEEALEQIKEAGVTNFKTLYTNELDCGPFISDTLRA
DPTRSELEALVEIYRMMRPGEPPTKESAEGLFQNLFFSQDRYDLSAVGRMKFNRRLDRDE
DVGEGTLSNDDIVDVLKTLIEIRNGNGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER
AVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNSYGFLESPYRK
VENGKVTDQIEYLSAINESRYIIAQAAAKLDENDELTEDLVSVRAGGDFTLKPKEDVQYM
DVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERVVARDSG
VCVVAHRGGVIDRVDAGRIVVKVNNDEVDAGDAGVDIYNLIKYTRSNQNTCINQRPIVKT
GDTVTRGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHI
QELTCIARDTKLGSEEITADIPNVGEAALAKLDESGIVYIGAEVGPGDILVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPTSTKGTVIDVQVFTRDGLEKDQRSKEIETEQL
NKVRKDLNEEFRIVETATFERLRQALVGQTVSGGKNTNKGDVLTDEALTGLERSDWFKLR
MDDDALNEQIDRAEVQLEERRKELDERFEDKKRKLQTGDDLAPGVLKIVKVYLAIKRRIQ
PGDKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQVLEMHLGMAA
KGLGDKVDQMIRAQKAVADIRNFLEEVYNLTGDAYNKEQLDQFSDEEVIEMANNLRAGVP
MATPVFDGAKEAEIKALLRLADLQDSGQRTLHDGRTGDAFLRPVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGR
TKLYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINMELDHDE
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatttactgagaagaaacgcatccgcaaagattttggcaagttgccacag
gtgatggatgtaccttacctgctcgcaatacagttagactcctacgaaaaatttactcag
gctaatgccgccagtgccgaatctcggctcgatattggcttgcacgccgcattcaaatcg
gtattcccgattgttagttactccggtaacgcggcacttgaatacgtaagctaccaactt
ggtaagcccgtattcgatgtcaacgaatgtattttacgtggcgtgacctacgctgttccg
ctgcgagtgaaggttcgattgatcatttacgataaagaatcttccaacaaaaccattaaa
gacatcaaagagcaagaagtctacatgggtgagataccactcatgacagaaaacggtact
tttattattaacggtaccgagcgggtgattgtttctcagttacaccgttcgcctggtgtg
ttctttgaccacgataaaggcaagactcacagctccggtaagttgttgtactctgcccgt
gtgatcccttaccgtggttcatggttggacttcgagttcgacccgaaagatctggtctat
gtgcgtattgaccgccgccgcaagttgcctgcaactattttgctgcgtgcgttaggtttc
tcttcgcaagaaatgctgggcatgttcttcgaaaccgacgagttcagcgtgcaggacacc
ggcgagtacacgctaaagctgatcccgtctcgccttcgaggcgacgtgaccagcttcgac
atcaaagatcaatccggcaaggttattgttgaggaaggtcgtcgaattaccgctcgtcac
atccgtcaaatggaaaagtctggcgttgaagagctcaatgtcccggtcgtgtacatggtt
ggccgctcgttggcagaagatctgatcaacgagcaaaccggtgaggttctgctggagtgc
aataccgagctgacagaagaggccttggagcagatcaaagaagctggtgttactaacttc
aaaacgttgtacaccaacgagctggactgcggaccgtttatctcagacaccctgcgcgca
gacccaacccgctctgagctagaagcgttggttgaaatctaccgcatgatgcgcccaggc
gagccgccgaccaaagagtctgcagagggcctgttccagaacttgttcttcagccaagat
cgttacgacttgtctgctgttggtcgtatgaagtttaaccgtcgtctagatcgcgatgaa
gatgtgggtgaaggtaccctgtctaacgatgatatcgtcgatgtactgaagacgctgatc
gagatccgtaacggtaatggcgttgtggatgatatcgatcacctgggtaaccgtcgtatc
cgctctgttggcgaaatggctgaaaaccaattccgcgtcggtttggtacgggtagagcgc
gctgttaaagagcgcttgtccatggctgaatccgaaggtttgatgccgcaggatttaatc
aatgccaagccagtggctgctgcagtgaaagagttctttggctcttcccagttatcccag
tttatggatcagaacaacccgctttctgaggtaacccacaagcgtcgtgtatctgcgcta
ggcccgggtggtttgacccgcgagcgtgccggttttgaggtgcgcgacgtgcacccaaca
cactacggtcgggtttgcccaattgaaacaccggaaggtccaaacattggtttgatcaac
tctctggcgacctatgctcgcaccaacagctacggtttccttgaaagcccttaccgcaag
gtggaaaacggcaaggttaccgatcagatcgaatacctatcggcgattaacgagtcgcgc
tacatcatcgcacaggccgcggctaagctagacgagaacgacgagctaaccgaagacttg
gtatcggtacgtgccggtggcgacttcaccttgaagccgaaagaagatgttcagtacatg
gacgtatcaccgcgtcaggtggtgtccgtggcggcgtctttgattccgttcctggagcac
gatgatgctaaccgagccctgatggggtcgaacatgcaacgtcaggcggtacccactcta
cgggctcaaaagccgttagttggtaccggcatggagcgcgtggttgcgcgtgactccggt
gtgtgtgtggtagcccatcgcggcggtgttatcgatcgcgttgatgccggccgcattgtg
gttaaggtaaacaacgacgaagttgatgccggtgacgcaggtgtggatatctacaacctg
atcaaatacacccgttctaaccagaacacgtgtattaatcagcgtccaatcgttaaaacc
ggtgacacggttacccgtggtgacatcctggccgacggcccatccgttgatctgggtgag
ctggcgttagggcaaaacatgcgcatcgcatttatgccttggaacggctacaactttgag
gattccattctggtatccgagcgtgtggtgcaggaagatcgcttcaccaccatccatatt
caggaattaacctgtattgctcgtgacaccaagctaggcagcgaagaaatcaccgcggat
attcccaacgtgggagaggccgcactggctaagttggatgaatcaggcatcgtctacatt
ggtgccgaagtaggccctggtgacattctggtgggcaaggtaacgcctaaaggcgaaacc
caacttaccccagaagagaaactgttgcgtgctattttcggtgagaaagcctcggacgtt
aaagatacttcgctgcgtgtgcccaccagtaccaaaggtaccgttattgacgttcaggta
ttcactcgcgatggcttagagaaagatcagcgctccaaagagattgaaaccgaacagttg
aataaggttcgtaaagaccttaacgaagagttccgtattgtagaaaccgcaacctttgag
cgtttgcgtcaggccttagtgggccaaaccgtttccggtggcaaaaacacgaacaagggc
gatgtgttaaccgatgaagcgctgactggtttggagcgcagtgattggttcaagctgcgc
atggacgacgatgcactaaacgagcagatcgaccgcgccgaagtacagttggaagagcgt
cgcaaagagctcgacgagcgttttgaagacaaaaagcgcaagttgcaaactggtgacgac
ctggccccaggcgtactgaagatcgttaaggtttacctggctatcaaacgtcgcattcag
ccgggcgataaaatggccggccgtcacggtaacaagggtgttatctcggtcattatgccg
gtagaagacatgccttacgatgaaaacggcgagccggtagacatcgtactgaacccactg
ggtgtaccttcgcggatgaacgttggtcaggtgctggaaatgcacttgggtatggcggcg
aaaggtttgggtgacaaggtcgaccaaatgattcgcgcgcaaaaagccgtggccgatatc
cgtaacttcctggaagaggtgtacaaccttaccggcgatgcttacaacaaagagcagttg
gatcaattcagtgacgaagaagtcatcgaaatggctaacaacctgcgcgctggtgtgccc
atggcaacgcctgtgttcgacggtgctaaagaagcggaaatcaaagccttgctacgcttg
gccgacctgcaagatagcggtcagcgtaccttgcacgatggccgtaccggtgatgccttc
ctgcgtcctgtaaccgtaggttacatgtacatgctgaagctgaaccacttggttgacgac
aaaatgcacgcccgttccactggttcctacagtttggttactcagcagccgctgggtggt
aaagcgcagttcggtggtcagcgattcggagagatggaggtatgggcactggaagcatac
ggcgccgcctataccttgcaagaaatgcttacggttaagtcggacgacgttgtcggtcgt
accaagctctataaaaatattgttgatggcgaccatcgcatggagcccggaatgccagaa
tcctttaacgtactgttaaaagagattcgctcactgggtatcaatatggagctggaccac
gacgaataa
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