Hafnia alvei: AT03_02245
Help
Entry
AT03_02245 CDS
T03425
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hav
Hafnia alvei
Pathway
hav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AT03_02245 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hav03021
]
AT03_02245 (rpoB)
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_02245 (rpoB)
Enzymes [BR:
hav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AT03_02245 (rpoB)
Transcription machinery [BR:
hav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AT03_02245 (rpoB)
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AT03_02245 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1350
Motif
Other DBs
NCBI-ProteinID:
AIU71321
UniProt:
A0A097QXU9
LinkDB
All DBs
Position
465437..469465
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTEQILDLFFDKVVFEIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDGITLIEVPVEYIAGKVVAKD
FIDENTGELICAANMELSLDLLAKLSQAGYKRIETLFTNDLDHGAYISETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIEVMRKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGIVT
DEIHYLSAIEEGNYVIAQANSNLDDEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHDVLVSGGVEAEKLAKLPRDRWLELGLADEAKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQQQEVAK
LREFIQKAYDLGDNTRQTVDLNTFTDDEVMRLAENLKKGLPIATPVFDGAKEKEIKELLT
LGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gttttggacataccttatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatccggaagggcaacacggcctggaagcagcattccgttccgtattcccaatccag
agttacagtggtaattccgagctgcagtatgtcagctatcgtctcggtgagccggtattc
gatgttaaagaatgccagatccgtggcgtaacttactccgctccgctgcgcgttaaactg
cgtctggtaatttacgagcgtgaggcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgactgataacggtactttcgttatcaacggt
actgagcgcgtaatcgtatctcagttacaccgtagcccaggcgtgttctttgacagcgat
aagggtaaaacccattcatcgggtaaagtgctgtataacgcacgtatcatcccttaccgt
ggttcatggttagatttcgaattcgatccgaaagacaacctgtttgtgcgtattgaccgt
cgccgtaaattacctgcgaccattattctgcgcgcattgaactttacgactgagcagatc
cttgacctgttcttcgacaaagttgtcttcgagattcgtgacaataaactgcagatggag
ctggttccagaacgtctgcgtggcgaaactgcgtccttcgatatcgaagctgacggcaag
gtctatgttgaaaaaggccgccgtattaccgcacgccacattcgccaattggaaaaagac
ggcattacgctgatcgaagttccagttgagtacattgctggtaaagtcgtcgctaaagat
ttcatcgacgaaaataccggtgagctgatctgtgcagccaacatggagctgtcactggat
ctgctggctaagctgagccaagcgggttacaagcgtatcgaaacgctgttcaccaacgac
ttggatcacggtgcttatatttctgagaccattcgcgtcgatccaacaagcgaccgctta
agcgcgctggttgaaatctatcgcatgatgcgtcctggtgagccaccaacacgcgaagca
gctgaaaacctgttcgagaacctgttcttctccgaagaccgctatgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgtgaagagattgaaggctccggtatcctg
agcaaagacgacatcattgaagtgatgcgtaaactcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacttgggtaaccgtcgtatccgttccgtgggcgaaatggct
gagaaccagttccgtgtaggtctggtacgtgttgagcgtgcagttaaagagcgtctgtct
ttgggcgacctcgatatgctgatgcctcaggacatgatcaacgccaagccaatttctgca
gccgttaaagagttctttggttccagccagctgtctcagttcatggaccaaaacaacccg
ctgtcagaaattacgcataagcgtcgtatctccgcgttgggcccaggtggtttgactcgt
gagcgcgcaggctttgaagttcgagacgttcatccgactcactacggtcgtgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccttgtctgtttatgcacag
actaacgaatacggcttcttggaaactccataccgccgcgttcgtgatggaattgtaact
gatgagattcattacctgtctgctatcgaagaaggcaactacgtcatcgctcaggcgaac
tccaacttggacgacgaaggccgctttgtagaagatctggttacttgccgtagcaaaggc
gaatcaagtttgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttctgtcggtgcttccctgatcccgttcttggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccaactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgtagccgttgactccggtgttaccgctgttgctaaacgt
ggtggtgtgatccagtacgtggatgcttctcgtatcgttatcaaagttaacgaagatgag
atgtacccaggcgaagcaggcattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtcaatctgggcgaaccaattgaacgtggc
gacgtgctggctgacggcccgtctaccgatctgggtgaattggctctgggtcagaacatg
cgcgtggcattcatgccatggaacggttacaacttcgaagactccatcttggtgtctgag
cgtgttgtacaggaagatcgcttcacttctatccacatccaggaactggcttgtgtgtct
cgtgacaccaaactggggcctgaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtttatatcggtgcagaagtgaaaggtggt
gacattctggttggtaaagtaacgcctaaaggcgaaactcagctgactccagaagagaaa
ctactgcgtgcgatcttcggcgagaaagcatctgatgttaaagattcttctctgcgcgtt
ccaaacagcgtttctggtaccgttatcgacgtacaggtctttactcgcgacggcgtagaa
aaagacaaacgtgcgcttgaaatcgaagagatgcagctgaagcaggctaagaaagacctg
actgaagaactgcagatcttggaagctggcttgtttgcccgtatccatgacgtgctggta
tctggtggtgttgaagctgagaaattggctaagctgccacgcgaccgctggttagaactg
ggtctggctgatgaagctaaacagaaccagctcgagcagttggctgagcagtacgacgaa
ctgaaatctgatttcgagaagaaactggatgctaagcgtcgtaagatcactcagggcgac
gatctggctccaggcgtactgaaaattgttaaggtttatctggctgttaaacgtcagatc
cagcctggtgacaagatggcaggccgccacggtaacaaaggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtactcctgtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacttgggtatggct
gcaaaaggtattggtgagaaaattaacgccatgctgaagcagcagcaggaagtggccaag
ctgcgtgagttcattcagaaagcctacgatctgggcgataacacgcgtcagaccgttgat
ctgaacacctttaccgatgacgaagttatgcgtctggctgagaacctgaaaaaaggtctg
ccaatcgcaacaccagtcttcgatggtgcgaaagagaaagaaatcaaagagcttctgaca
ttaggtggcattcctacctctggtcagatcacgctgtttgatggccgtaccggcgagcag
ttcgagcgtcaggttactgtcggctacatgtatatgctgaaactgaaccacttggttgat
gacaaaatgcatgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtatgggcactggaagcg
tatggcgctgcctacacgctgcaggaaatgctgaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccgtatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctcggtattaacattgagctggaa
gacgagtaa
DBGET
integrated database retrieval system
