KEGG   Hafnia alvei: AT03_03190
Entry
AT03_03190        CDS       T03425                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
hav  Hafnia alvei
Pathway
hav02024  Quorum sensing
hav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT03_03190 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AT03_03190 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hav03019]
    AT03_03190 (hfq)
   03036 Chromosome and associated proteins [BR:hav03036]
    AT03_03190 (hfq)
Messenger RNA biogenesis [BR:hav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AT03_03190 (hfq)
Chromosome and associated proteins [BR:hav03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AT03_03190 (hfq)
SSDB
Motif
Pfam: Hfq LSM Herpes_capsid Hfq_1
Other DBs
NCBI-ProteinID: AIU71490
UniProt: A0A097QYD8
LinkDB
Position
684338..684643
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPGTGGSSNYHGSNQASSPSSQDSDDAE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccgttcctgaacgcactgcgtcgcgaacgagtc
ccagtttcgatctatttggtgaatggtattaagctgcaaggccagattgagtctttcgat
cagtttgtcattctgttgaaaaacacagttagccagatggtttataagcacgcaatttct
accgttgttccgtctcgtccggtttctcatcatagcaataatccgggaactggcggcagc
agcaactaccacggtagcaatcaggcgtcttcaccgtcgtctcaggacagcgatgacgct
gaataa

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