Hyphomonadaceae bacterium UKL13-1: AEM38_08955
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Entry
AEM38_08955 CDS
T04338
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hbc
Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AEM38_08955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbc03021
]
AEM38_08955
03400 DNA repair and recombination proteins [BR:
hbc03400
]
AEM38_08955
Enzymes [BR:
hbc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AEM38_08955
Transcription machinery [BR:
hbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AEM38_08955
DNA repair and recombination proteins [BR:
hbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AEM38_08955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AMS29550
LinkDB
All DBs
Position
complement(1928344..1932468)
Genome browser
AA seq
1374 aa
AA seq
DB search
MAQSFTGKKRIRKSFGKIAEAVTMPNLIEVQKSSYDQFLQKDVPQEMRRDEGIEAVFKSV
FPIKDFQERAVLEYVSFEFEPPKFDVDECIQRDLTFSAPLKVKLRLITFESDEDTGAKSV
KDIKEQDVYMGDIPLMTDKGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RVIPYRGSWLDFEFDAKDVVYVRIDRKRKLPATTILYALGMGAEDILSTFYKTITYTAAE
GGWNIPFVPERWRGQKPAYDLINAANGKVVAEGGKKLSARNANKLAEEGVTTLLVPDDQL
IGRFAAFDIASAENGEIYAEAGQELSHVQIVEMRQAGVTEIDVLDIDNVTVGPWMRNTIV
LDKNDGRESALTDIYRVMRPGEPPTQETAQAMFQSLFFDKERYDLSAVGRVKMNMRLDLD
VDDEMRVLRKEDIIEVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLRME
RAIKERMGSIDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYR
RVIDGKMQEEVIYLSAVEEAKYAIAQANSPVDATGYITEELVEARQNGDATILHRDLIEF
IDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKAEAPLVGTGMEGVVARDS
GATIVARRPGIVEQIDGTRIVVRATEETDPTKPGVDIYRLIKFQRSNQNTCINQRPLVRV
GDLVRDGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIHL
EEFEISARDTKLGPEEITRDIPNVGEESLRNLDEAGIVAIGAEVNPGDILVGKVTPKGET
PMTPEEKLLRAIFGEKASDVRDTSLKVPPGVQGTVVEVRVFNRHGVDKDQRAMQIEREEI
ERLAKDRDDELAILERNIYGRLKELLVGKEGLSGPKGFSKGEITEETLADFSKGQWWQIA
IADEAAMGEIEAIQKLFQDAKRSLDARFEDKVEKLRRGDELPPGVMKVVKVFVAVKRKLQ
PGDKMAGRHGNKGVISRITPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLGWAC
AGLGKQVKEALEAYERAGDKARFVDTLTSIYGPDEELPTSEEDLKILGRNLSFGVPIATP
VFDGARESDIRELLRRTGNDETGQSTLYDGRTGEAFKRKVTVGYIYMLKLHHLVDDKIHA
RSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVY
ESIVRGDDTFEVGIPESFNVLIKEMRSLGLNVELVEGMGAAVGDGAGGQLPPKK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttcacgggtaagaaacgtattcgtaaatctttcggcaaaattgccgag
gcagtgacaatgccgaacctgatcgaggttcaaaaaagttcctatgaccaattccttcaa
aaagatgtgccgcaagaaatgcgccgcgacgaaggcattgaagcggttttcaaatcggtg
ttcccgatcaaggatttccaagaacgcgccgttctggaatatgtatcttttgagtttgag
ccccccaagtttgacgtggatgaatgtatccagcgcgacttgacgttttcggctcctctg
aaagttaagttgcgtctgatcacgtttgaatcagatgaagataccggtgcaaagtcggtc
aaggatatcaaggaacaagacgtctatatgggcgacattcccttgatgactgacaagggc
acgttcgtagtgaacggtaccgagcgcgtgatcgtctcgcagatgcaccgttcgcctggc
gtcttcttcgaccatgataagggcaagacccactcgtcgggtaagctgttgttcgcagcc
cgcgtcattccttaccgtggttcgtggctggactttgaatttgatgcaaaggacgtggtt
tacgtccgtatcgaccgcaagcgtaagttgcctgcgaccaccattctctatgccttgggc
atgggtgcggaagacattctgtcgaccttctacaagaccatcacctacacggcagcggaa
ggcggctggaacattccgttcgtgccagagcgttggcgcggtcaaaagcctgcttatgat
ctgatcaatgcagcgaacggcaaagtcgtggctgaaggcggcaagaagttgtcggcccgc
aacgcgaataaattggctgaagaaggtgtcaccaccttgttggtgccagacgatcaattg
attggccgctttgcagccttcgatatcgccagcgccgaaaatggtgaaatctatgccgaa
gccggccaagagttgagccatgttcagatcgtggaaatgcgccaagctggcgtgactgaa
atcgacgtcttggacatcgacaatgtcaccgttggtccttggatgcgtaacaccatcgtt
ctggacaagaatgacggccgtgaaagcgcgttgaccgacatttaccgcgtgatgcgccca
ggtgaaccaccaacacaagaaacggcgcaagccatgttccaatccttgttcttcgacaag
gagcgctatgacctctcggccgttggccgcgtgaaaatgaacatgcgcctcgacctcgat
gtggatgacgaaatgcgcgttctgcgcaaggaagacatcatcgaagtcctgaaggttctg
gttggcctgcgtgatggccgtggcgaaatcgacgatatcgataacctcggcaaccgtcgc
gtgcgttcggtcggcgaattgatggaaaatcaatatcgcgttggtctgttgcgtatggaa
cgtgcgatcaaagagcgcatgggttctatcgatatcgacactgtcatgccgcatgacttg
atcaacgcaaagccagctgcggctgcagtgcgcgaattctttggttcgtcgcaattgtcg
caattcatggaccagaccaacccgctgtcggaaatcacccacaagcgccgcttgtcggct
ttgggccccggtggtttgacccgcgagcgtgcaggcttcgaagtccgcgacgtgcaccca
acccattatggccgtatctgcccaatcgaaacgccagaaggcccgaatatcggtctgatc
aactcgttggcgacctttgcgcgcgtcaataagtacggctttatcgaaagcccatatcgg
cgtgtcatcgacggcaagatgcaagaagaggtgatctatctctccgccgttgaagaagcc
aaatatgcgattgctcaggcaaactcgcctgtggacgcaactggctacatcactgaagaa
ttggtcgaagcccgtcaaaacggcgacgccaccattctgcaccgcgatctgatcgagttc
atcgacgtgtcgccaaagcaggtggtttcggttgctgcggctctgatcccattcttggaa
aacgacgacgcaaaccgcgctctgatgggctcgaacatgcaacgtcaggccgtgcctttg
gtgaaagccgaagcgccattggtcggtaccggcatggaaggcgttgtggctcgcgactct
ggcgcgaccatcgttgcccgccgtcccggcatcgtggagcagatcgacggtacccgtatc
gttgtgcgcgcaaccgaagaaaccgatccaaccaagccaggcgttgatatctatcgtctg
atcaagttccaacgctccaaccaaaacacctgtatcaaccagcgtcctttggtgcgggtt
ggcgatttggtccgtgatggcgacatcatcgctgacggtccatcgacggatttgggtgaa
ttggctctgggccgcaacgtgctggtcgcgttcatgccttggaacggttacaacttcgaa
gactccatcctgatttcagagcgcatcgtgcgcgacgacgtcttcacctcgatccacttg
gaagagtttgagatttcggcacgcgataccaagctcggccccgaagaaatcacccgcgac
attccaaacgtcggcgaagaaagcctgcgaaacctggatgaagctggcatcgtggccatt
ggtgctgaagtaaacccaggcgatattctggttggcaaggtaacgccaaagggcgaaacc
cccatgaccccagaagagaagctcttgcgggcgatctttggtgaaaaggcgtctgacgtt
cgcgacacctccttgaaagtgccaccaggcgttcaaggtacagtcgtggaagtccgcgta
ttcaaccgccacggcgtcgacaaagaccagcgcgcgatgcaaatcgagcgtgaggaaatt
gagcgtttggctaaggaccgtgatgacgaattggcgatccttgagcgcaacatctatggc
cgcttgaaggaattgctggtcggcaaagaaggcctgtcaggtcctaagggcttcagcaag
ggcgaaatcaccgaagaaaccttggcagacttctccaagggtcaatggtggcaaatcgcg
attgccgatgaagctgcgatgggtgaaatcgaagccattcaaaagctattccaagatgca
aagcgcagcttggatgcccgctttgaagacaaggttgaaaagctgcgtcgtggcgacgaa
ttgcctcctggcgtgatgaaagtggtcaaagtcttcgtggctgtgaagcgcaagctgcag
cccggcgacaaaatggctggtcgtcacggcaacaagggggttatctcgcgcattacccca
atcgaagacatgccattcctcgaagatggtacccacgtcgacatcgttctgaaccccttg
ggcgtgccttcgcgcatgaacgtgggtcagatcctcgagacccacttgggttgggcctgt
gctggccttggcaagcaagtcaaggaagcattggaagcctatgagcgggcaggggacaag
gcacgctttgtcgacaccctgaccagcatctatggccctgatgaagaattgccaacgagc
gaagaagacctgaaaatcttgggtcggaacctgtcgttcggcgttcccatcgcgacccct
gtgttcgacggtgcacgcgaaagcgacatccgggaattgttgcgccgtacgggcaatgat
gagaccggtcagagcacgttgtatgatggccgcaccggtgaagcgttcaagcgcaaggtc
accgtgggctatatctacatgctcaagctgcaccacttggtggatgataagattcacgcc
cgttcgatcggtccatactcgctcgtcacccagcagccgctgggcggtaaggcgcagttc
ggcggtcagcgctttggggaaatggaagtctgggcactggaagcctatggcgccgcttac
accctgcaagagatgttgacggtgaagtccgacgacgtcgctggccggaccaaagtgtat
gagagcatcgtgcgcggtgatgatacgttcgaagtcggtatccctgaatcgttcaatgtt
ttgatcaaggaaatgcgttccttgggtctgaacgtcgagctggttgaagggatgggggct
gctgttggcgatggtgccggcggccaactcccaccgaagaaataa
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