Hevea brasiliensis (rubber tree): 110638608
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Entry
110638608 CDS
T05150
Name
(RefSeq) exosome complex component RRP45A-like
KO
K03678
exosome complex component RRP45
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110638608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110638608
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110638608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
FtsA
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
110638608
NCBI-ProteinID:
XP_021644900
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MDARLTNAWRMTVNEKKFIETALASDMRVDGRNPLEYRKITIKFGREDGSSEVQLGQTHV
MGFVTSQLVQPYRDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA
VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFQRPECTLGGEDGQQV
IVHPPEVKEPLPLIVHHLPIAVTFAFFNSEHTMLIDPTHNEEAVMGGRMTVTVNANGDIC
AIQKAGGEGVTQSDIMRCLRLASRNAESITKKIKDAVEAYSTERALRKIKRHSTSVAVNV
SLSGGDVREHENKSFMHRGNSELSRDQTERLKLVSEESCTSQSNDIDGGLRSSEQGGTSC
REGNATNFLGGRSRWDPYSKGVDSDSLKASLASCGISTPNKHKGAEQKSTQFEEDKIPDD
TEPATSAADAGPQMSGEKTLKDTVKPKNKRRKKTSSSMNAS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgagattgacgaatgcatggcgaatgactgtgaacgagaagaaattcattgag
actgctttggcttcggacatgagagtcgacggtcgtaatccccttgagtatcgtaaaata
acaatcaagtttggcagagaagatgggtcatcagaggtgcagctaggccagactcatgta
atgggttttgtgacaagtcaactagttcaaccttatcgagaccgaccaaatgaagggtca
ctttccatttttacggagttctcgcccatggctgatccttcatttgagccaggccgtcct
ggagaatctgcagtggagttgggccgaataatcgaccgaggtctaagggaaagcagggca
gtggatacagaatcactttgtgttcttgctgggaagttagtatgggccattcgaattgac
cttcacatcttagacaatggggggaatcttgttgatgctgccaatattgctgctttagct
gctctcttgacatttcagaggccagaatgtacattaggaggagaagacggtcagcaagtg
atagtacatccacctgaggtgaaagaaccacttccattgatagtgcatcatcttcctata
gctgtaacttttgcatttttcaacagtgagcacaccatgttgatagatccaacccataat
gaggaggctgttatggggggaagaatgaccgttacagtgaacgcaaatggtgatatttgt
gctattcagaaagctggaggagagggtgtgacacagagtgatataatgcgttgtttgcga
cttgcgtctaggaatgctgagtccataacaaagaagataaaagatgcagttgaggcatac
agcacagagagagcattacgcaagatcaagcgccattctacttctgttgctgtcaatgtt
agcttatctggtggtgatgttagggagcatgaaaacaaatctttcatgcacaggggcaat
agtgaattgtcaagagaccagacggagagattgaagctagtatctgaggaaagctgcaca
agccaaagtaatgacatagatggtggtctgaggtcatctgaacaaggcggaactagttgc
cgagagggcaatgctacaaatttccttggggggcgttctagatgggatccttattcgaag
ggtgttgattcagattccctgaaagcttctctagcttcatgtggaatatcaacacccaat
aaacataaaggagctgagcaaaagagcactcaatttgaggaagataaaatacctgatgat
actgaaccagctacttcagctgctgatgctgggcctcaaatgagtggagagaagactttg
aaagatactgtaaagcctaagaacaagagaaggaaaaagacatcctccagcatgaatgca
agttag
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