Hevea brasiliensis (rubber tree): 110663040
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Entry
110663040 CDS
T05150
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110663040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110663040
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110663040
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110663040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110663040
NCBI-ProteinID:
XP_021677933
LinkDB
All DBs
Position
Unknown
AA seq
2416 aa
AA seq
DB search
MPKLSSTVPNQIRFLLQSLTEANVDSVFQELCQFIDYGVEGSVLVLQTCLEQLYFHRTDL
KNMQLEPVFVSIFRFLLDKPNFSTVLCQSLRSTEINDEFLENLSSVLNLSLSEKIGIGLA
LSDSEIIESRMSAKKFCMAQIEELCTNPVSMNSSEQIQNIVMFLQQSEGLSKHVDHLLQI
LSLVQPKETFPFVLTPLLSDEMREANFLRNVDLYHECKENEFDALLAEMEKEMSVGDVVK
ELGYGCTFDASHCKEILSHFLPLTESTISKILGTIVSNHTGLEDNQSTFSNFVIALGFSS
YTDLPLLSSWDIDILVKTIKQLAPGTDWIQVMENMDHEGFYIPNEEAFSFFMSVYRHACQ
DLFPLHAICGSLWKNTLGQLSLLKYAVLAPPEVFTFAHSGRQLVYNDTVHGHKLQLGHAN
HAWLCLDLLDVLCQLAEMGHSSSIRSMLEYPLKHCPEILLLGMSHINTAYNLLQCEVSFM
VFPMIIKSFTGSGVILYLWHVNPSLVVRGFVDVYNIESDCMTKILDICQELKILSSVLDM
IPSPSGIRLAALASRKELIDLEKWLTTNLITYKDVFFEECLKFLKEVQLGGSQDFSAKPF
HHTSSITNIYMETSSTFLKVLKAHTNLIISSRLSEEMERLNLTIMDSNPRLQNGGSAESS
APDGFSDDVEAEANSYFHQMFSSQLTIDAMVQMLAQFKESPVRREQLIFECMIGNLFEEY
RFFPKYPERQLKIAAVMFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRGTHSELVSFIERALARISSGHLESDGSNNPSAAHHHS
LSQASSGNGELNSVNMTQPVQQLSSALHVQQRHESPLDDRHKVSVASSNDTKSLLSAGGQ
SSIAPLGDNSSIQKSVASTPAMLSSSHGFIRPSRGATSARFGSALNIETLVAAAERRETP
IEAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEI
YSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSFLKDRKREIEGNPDFSNKDVGASQPQIV
AEAKSGMISPLNHAELSLEVANPSNSGGHTHLLSQYAAPVHLPSGTLMEDEKLAALGLSD
QLPSAQGLFQATPSQSPFSVNQLPTAIPNIGTHVIINPKLNSCGLHLHFQRVVPIVMDRA
IKEIVSSIVQRSVSIATQTTKDLVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEP
LRTSISTQLRNSLQGLSIASELLEHAVLLATNDNLDLGCAIIEQAATDKAIQTIDGEIAQ
QLSLRRKHRDGPTFFDANIYTQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSS
QSSHSIPIGSSSSLGVTGLASAFGSGSGQLNASYSSTPGNLGAEAVSRTLDLASDAIDSN
SAVLLSASSIHIGATDGVIQQNSENNSVSASLLSTAPAPELQSGDSSDAMKESVISSQPI
TSSAASDRLGSAISDPSLNTRDALDKYQIVAQKLEALVNSDAREVEIQGVIAEVPEIILR
CISRDEAALAVAQKVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYSDEE
RKFNKDITIGLIRSELLNLAEYNVHMAKLIDGGRNKGATEFAISLIQALVIEESKVISEL
HNLVDALAKLAAKPGSPEPLQQLIEIVKNPVANSAVLSGITVGKEDKTRQSRDKKAVNQS
IPSREDYNNAESVEPDPADLHERVSMLFAEWYRICELPGANDAACTHYILQLHQNGLLKG
DDMTECFFRILTELSVAHCLSSEVINSGSLQSTQQGQVLSFLAIDIYAKLVFSILKVEQG
SSRYLLLSKILTVTVRFIQRDSEEKKTSFNPRPYFRLIVNWLLDLVSPDPVIDGANFQIL
TSFAGAFHNLQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFLEP
FLRSAELGMPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP
RNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAVLKVKQMKADVDEYLKTRQQGSSFLTE
LKQRLLLSPSEAASAGTRYNVPLINSLVLYAGMQAIQQLQARTPHSQSTGNTAPLAVLLV
DAALDIYQTLILELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFSESNQEIIQEQI
TRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLK
PMDESMVSGWVSEGAH
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagttgtcatcgaccgttccgaatcagattcggttcttgctccagagcttgacc
gaagccaatgtcgattctgttttccaagagctatgccagtttattgactatggagttgag
ggaagtgttctggtgctccaaacctgcttggaacagctgtatttccacaggacagacttg
aaaaatatgcagctggaaccagttttcgtgtcaattttcagatttcttttggacaaacca
aatttcagtacggtgctttgtcaatcattaagaagcacagagattaatgatgaattccta
gagaatttgtctagtgtgttaaatttatctctgtctgaaaaaattggcattggtcttgct
ctgtctgattctgagatcattgaatccagaatgagtgcaaagaaattttgcatggctcag
attgaggaactgtgtaccaatccagtttctatgaattcgtcggagcaaattcagaatatt
gttatgttccttcagcagtctgagggcctttccaagcatgtagaccaccttttgcagata
ttatccttagtgcaaccaaaggagacttttccatttgttttaactccactgctttcagat
gaaatgcgcgaggccaatttcttgaggaatgtggatctgtaccatgaatgcaaggaaaat
gaatttgatgcgctgttagctgaaatggagaaggagatgagtgtgggtgatgttgtgaaa
gaattgggctatggatgcacatttgatgcctcacattgcaaagagatattatctcacttc
ttaccgctgactgagagcactatctcgaagatacttggaactattgtgagcaaccatact
ggccttgaagacaaccagagcacattttcaaactttgttatagcactgggttttagcagc
tacactgatctcccactgttaagttcctgggatattgacatccttgtgaaaactatcaag
caacttgctcctggtacagattggatacaagtgatggaaaatatggatcacgagggattt
tacatccctaatgaggaagcattctctttcttcatgtctgtatatagacatgcttgccag
gatctattccctctccatgctatttgtggatccctgtggaagaatactctggggcaacta
tctcttctcaaatatgccgtattggcccctccagaagtgtttacatttgctcattctgga
agacaactggtctataatgacacagtacatggccataagcttcaacttggacatgcaaat
catgcatggttgtgtcttgaccttttggatgtgctttgtcagctagctgagatgggtcat
tctagttctattcggtcaatgctcgaatatcctctcaagcactgtccagaaatcttactt
cttggaatgtcacatatcaatactgcatataaccttctccaatgtgaagtgtcttttatg
gtttttccaatgataatcaaaagcttcacaggtagtggtgtgattctttacctctggcat
gtaaatcctagtcttgttgtgcggggatttgtagatgtttacaatattgaatcagactgc
atgaccaagatattggacatatgccaagaattaaagattctgtcatcagtgttagacatg
attccttctccttctggcatcagattggcagcgctagcttcacgaaaagaacttattgac
cttgagaagtggctgactactaatttaattacatacaaggatgttttctttgaggaatgc
ctcaagtttttgaaggaggtccaacttggtggatcacaggatttttctgccaaacctttc
catcatactagttctataacaaatatttatatggagactagttctaccttcctgaaggtc
cttaaggcccatacaaacttaattatctctagtcgactttctgaggaaatggaaaggtta
aatttaacaattatggactctaatccgcggctgcaaaatggtggctctgcagaatcatct
gcccctgatgggttttcagatgatgttgaggcagaagctaactcttacttccatcaaatg
ttttctagtcaattgacaattgatgcaatggttcaaatgcttgctcaattcaaggaatca
cctgtgagaagggagcagttaatttttgaatgcatgattggcaatctatttgaggagtat
agattcttcccaaagtaccctgaaaggcaactaaaaattgctgctgttatgtttggttct
gtcatcaagcaccagctcgtaactcatctaacacttgggattgccttgcgtggtgtttta
gatgcactgcgaaaacccccagattccaaaatgtttgtttttgggaccaaggctttggag
cagtttgtggatcgcctgattgagtggccgcagtattgcaaccatatcttacagatatct
catctgcgtggcactcattcagagcttgtttctttcattgaacgggcgcttgccaggatt
tcatcaggtcatttggaatcagatggaagtaacaatccttctgctgctcaccatcacagt
ttatctcaggctagctcagggaatggagagttgaatagtgttaacatgacacagcctgtg
cagcaactatcctctgcgctccatgttcaacagagacatgaaagtcctcttgatgaccgt
cataaagtctctgtggcttcgtctaatgacaccaagtctcttttatctgctggagggcaa
tcttcgattgctcctttaggcgataattcgagtattcagaagagtgtggccagtactcca
gctatgctgtcttcttctcatggtttcattcgtccttctcgtggagctacctctgctagg
tttggctctgctttgaacattgaaactcttgtagctgccgctgagagaagggaaacacca
atagaggctccagcttctgagattcaggataaaatatcgttcatcattaacaatatttca
gctgcaaacattgaggctaaagcaaaagaatttactgaaatattgaaagagcagtattat
ccctggtttgcccagtatatggttatgaaaagggcaagcatagagcccaattttcatgac
ttgtacttgaagtttcttgataaagttaattcgaaggccttaaataaggagattgtccag
gccacttatgagaactgcaaggttctcttaggttcggagctgataaaatcaagttcagag
gagcgttcattgctaaaaaacctgggaagctggcttggaaagttaactattggtaggaat
caagttctaagggctcgtgagattgatcctaaatctttgatcatagaggcatatgagaag
gggctgatgattgctgtaattccatttacttcaaaggttctcgagccatgccaaagcagt
ctagcatatcaacctcctaatccttggacaatgggtattcttggattgcttgctgaaatt
tattcaatgccaaacttgaagatgaaccttaaatttgacatagaggttctattcaagaac
cttggtgtagatatgaaggacataacacccacttcttttctgaaggatcggaaaagagaa
attgaagggaaccctgatttctctaataaagatgttggagcatcacaaccacagattgtt
gctgaagccaagtctggaatgatctctccactaaatcatgctgagttatcacttgaggtt
gccaatccatctaattccggtggccatacacatttgttatctcagtatgctgctcctgtt
catcttccttcggggacactgatggaggatgagaaactagctgcgctaggcttgtctgac
cagcttccttctgctcaaggactatttcaagctactccatcccagtcgcctttttctgtc
aatcagcttcccacggcaatacccaacattggaactcatgttataatcaacccaaagctc
aattcttgtgggttgcacttgcattttcaaagagtggttcctattgtaatggatagagct
atcaaagaaatagtgtccagcatcgttcagcgtagtgtttctatagcgacccagacaacg
aaggatcttgttttgaaggattatgccatggaatctgatgagacacgaatatataatgca
gcacacttgatggttgcaagtctggcaggaagcttagctcatgtgacatgcaaggagcca
ttacgtacttcaatttcaactcaactaaggaattctcttcaaggtttgagtattgcaagt
gaacttctggaacatgctgtgctacttgctacaaatgataaccttgatcttgggtgtgca
ataattgagcaggcagctacagataaggcgatacaaaccattgatggggaaatagctcaa
caactttctttaagaaggaagcatagggatggtccaacattttttgatgcgaacatatat
acccaaggttcgatgggtgttgtacctgaggccctccgccccaaaccgggtcacctatct
gtctctcaacagcgagtttatgaggactttgttcggcttccatggcaaaaccaatctagc
cagagctcacattctattcctataggttcttcatcttctttgggtgttactggtctggct
agcgcatttggttcaggttcaggacaacttaatgcaagctactcatctactccaggcaat
ttaggagctgaagcagtctctcggacattggatttggcttctgatgctattgactctaat
tcagctgtacttcttagtgcgtcatctattcatattggggcaactgatggtgttatccag
caaaattccgaaaacaattctgtcagtgcttcattgttgtctactgctccagcccctgaa
cttcagtcaggggattcctctgatgctatgaaggaatcggtaatttcttcacaaccaata
acttcatcagctgcttctgatagacttggaagtgccatttcagatccttctttaaataca
agggatgcgttggataaatatcagattgtagcacaaaagttggaggctttggttaatagt
gatgctagagaagtagaaatccagggagtaattgctgaggttcctgaaatcatacttaga
tgcatcagtcgagatgaggctgccttggctgtggcacaaaaggttttcaagggtttatat
gaaaatgcatcaaacaattttcatgttaatgcttgtcttgcaatcctggctgctattcgt
gatgtttgcaagcttgtggttaaagaactcactagctgggtgatttattcagacgaggag
cggaagttcaacaaagatattaccattggccttatacgcagtgaattgctcaatctggca
gagtacaacgttcatatggcaaaacttattgatgggggaaggaataagggtgcaaccgag
tttgctatttcccttatccaagctctagttattgaagagtccaaagttatttctgaactc
cataatcttgttgatgcattggctaagcttgctgcaaaacctggatctcccgagccatta
caacaactgattgagattgtcaagaatcctgttgctaattctgctgttttgtctggtatt
actgttggaaaagaggataagactagacagtctagagataaaaaggctgtaaatcagtcc
atccctagcagggaagactataacaatgctgaatcggtggaaccagatcctgctgatttg
cacgagcgggtttccatgctatttgcggaatggtaccggatatgtgaacttccgggtgca
aatgatgctgcttgtactcattatatcctacaattgcatcaaaatggactattgaagggg
gatgacatgacagaatgctttttccgaatccttacggaactatccgttgcacattgttta
tcttctgaggtgattaattctggtagcctgcaatcaactcaacaagggcaggttttgtcc
ttccttgccattgatatttatgcaaaacttgttttttcaatcctaaaggtggagcaagga
tcaagcagataccttctgttatcaaagattttgactgttactgtgagatttatacaaagg
gattcagaggagaaaaaaacatcttttaacccaagaccatatttccgactgattgtgaac
tggctattggaccttgtctccccagatcctgttattgatggtgcaaactttcagatcttg
acatcttttgctggcgcattccataatttgcagccccttaaagttcctgccttcagcttt
gcgtggcttgagctggtgagtcacaggagcttcatgccaaaattgctcacaggaaatgct
cagaagggttggccctatgtccaacgcttgctagtagatttattccagtttctggagcca
tttttgaggagtgctgaactaggaatgccagttcactttctgtacaaaggtacactaagg
gtgctgctggttctgctccatgatttcccagaatttctgtgtgattatcatttcaccttt
tgtgatgtgattcctcctagctgcatacaaatgcgtaatattattctcagtgcatttccc
cgcaatatgaggctaccggatccatctactcccaacttgaagattgatttgcttccagaa
ataagggaggcccctcacattctttctgaagttgatgcagttctaaaagtgaagcagatg
aaagcagatgtggatgagtatctcaagaccagacagcagggttcttcatttcttactgaa
ttgaagcagagactactactttcaccaagtgaagctgcatcagctggtacccgatacaat
gtaccattgatcaactcccttgtgctttatgctgggatgcaggccatccagcagctgcaa
gcaagaacacctcattcacagtcaacaggaaacactgctcctcttgctgtcttattggtg
gatgctgctttggatatttaccagacgcttatcctggaactagacactgaagggcgatac
ctctttctgaatgctgttgccaaccaactacgctatcctaacaaccatacgcattacttc
tcatttgtcctactttacttattttcagaatcaaaccaggaaattattcaggagcagatc
acaagagtccttttggaacgcttaatagttaatcgaccacatccatggggccttctgatt
actttcatcgagctcattaagaatcctagatacaacttctggaatcgatccttcatacga
tgtgcaccagagattgaaaagctctttgaatcagtggcgagatcatgtggtggcctaaag
cctatggatgagagtatggtctcgggctgggtttctgagggcgcacactga
DBGET
integrated database retrieval system
