Hevea brasiliensis (rubber tree): 110666945
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Entry
110666945 CDS
T05150
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110666945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110666945
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110666945
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110666945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110666945
NCBI-ProteinID:
XP_021683319
LinkDB
All DBs
Position
Unknown
AA seq
2400 aa
AA seq
DB search
MPKLSSTIRNQIRFLLQSLNEANVDSVFRELCQFIEYGVEESVLVLQTCLEHLHFHRTDL
QNLQLEPFLVSVFKFLLDKPNFSTVLCQSLRSAAINDEFLEDLSNMLHLSLSEKIGIGLA
LSESEIIETRMSAKKFCMAQIEELCANPVSVNSVEQIQNIVMFLQRSEGLSKHVDRLLQI
LSLLQPQEPFSFVLSPLLSDEMREANFLRNWDQYHECEENEFYALLAEMEEEMSAGDIVK
ELGYGCTFDASHCREILSQFLPLTETTISKILGTIARSHASLEDNQSTFSNFGIALGCSI
SSDLPLLSSWDIDILVMTIKQLAPGTNWIQVIENMDHEGFYIPNEEAFSFFMSVYRHACQ
DPFPLHAICGSLWKNTQGQLSLLKYAVLAPPEVFTFAHSGRLLVYHDAVHGHKLQLGHAN
HAWLCLDLLDVLCQIAEMGHSSSIQSMLEYPLKNCPEVLLLGMSHINTAYNLLQYEVSFM
VFPMIIKSGTGSGMIHYLWHINPSLVVRGFVDAYNIEPDLMTKILDICRELKILSSVLDM
IPSPSGIRLAALASRKELVDLEKWLTTNLITYKDFFFEECLKFLKEVQLGGSQDFSAKPF
YHTSSTTNIYMETSSTFLKVLKAHTSLIVSSRLSEEMERLNLTIMGSNPQLQNGGSADSS
TPDGFPDDVEAEANSYFHQMFSSQLTIDAMVQMLSRFKESPVRREQLIFECMIGNLFEEY
RFFPKCPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRGTHSELVSFIERALARISSGHLESDGSNNASAAYHHG
LSQASLGNGELNSVNTTQPMQQLSSALHVQQRHESPLDDRHKVAVASSNDTKSLLSAGGQ
SSVAPLGDNSSTQKSVVSTPAMLSSSHGFHRPSRGATSARFGSALNIETLVAAAERRETP
IEGPASEIQDKISFIINNISAANVEAKAKEFTEILKEQYSPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKALHKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMSILGLLAEI
YSIPNLKMNLKFDIEVLFKNLGVDMKDIAPTSLLKDRKREIEGNPDFSNKDAGASQPQIV
AEVKSGIISPLSHAELPLEVANPPNSGGHTHLLSQYAASVHLPSGTLMEMSIEILCFTDX
FQLSCDMQLPTAIPTIGTHVIINPKLNSWGLHLHFQRVVPIVMDRAIKEIVSGIVQHSVS
IATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISTQLRNSLQ
GLSIASELLEHAVQLATNDNLDLGCAIIEQAATDKAIQTIDGEIAQQLSLRRKHRDSVGS
TFFDANMYTQGSMGVLPEALCPKPGHLSVSQQRVYEDFVRLPWQNQSSQSSHSIPTGLSS
SSGATGLASAFGSGLEQLNAGYLSTPGNIGFEAASRTLDISSDAIESNSAAVLSSSSIHI
GATDGVTQQNSENNSVIASFPSTAPAPELQPGDSSDAVKELTSQQISSSAASEKLGSGIS
EPSLNTSDALDKYQIVAQKLEALVNSDAREAEIQGLIVEVPEIILRCISRDEAALAVAQK
VCFHLPVCISXHVNACLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLICSEL
LNLAEYNVHMAKLIDGGRNKSATEFAISLIQALVIEESKVISELHNLVDALAKLATKPGS
LESLQQLITTVRNPLANSAVLSGFTVGKEDKTRQYRDKKAVNEPIANREDYSNAESVEPD
PADLREKVSMLFAEWYRICELPGANDAACTHFILQLHQNGLLKGDDMTDHFFQILTEVSV
AHCLSSEVINSSALQSTQQGQNLSFLAIDIYSKLVFSILKVEQGSSRFFLLSKILAVTVR
FIQKDSEEKKTSFNPRPYFRLFVNWLLDLVSSDPVIDGANFRILTAFAGAFHNLQPLKVP
LFSFAWLEMVSHRSFMPKLLTGNAQKGWPYVQRLLVDLFQFLEPFLRSAELGIPVHFLYK
GTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKID
LLPEIREVPHILSEVDTALKEKQMKADVDEYLKTRQQGSSFLTELKQRLLLSTSEAASAG
TRYNVPLINSLVLYAGMQAIQQLQARTPHAQSLGNTTSLAVLLVDAALDIYQTLMLELDT
EGRYLFLNAVSNQLRYPNNHTHYFSFVLLHLFAESNQGIIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPMDESMVSGWVSEGAH
NT seq
7203 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagttatcatcaactattcggaatcagattcggttcttgcttcagagtttgaac
gaggccaacgtcgattctgttttccgagaactctgtcagtttattgaatatggagttgag
gaaagtgttctggtgctccaaacctgcttggaacacctgcatttccacaggacagacttg
caaaacttgcagctggaaccatttcttgtgtcagttttcaaatttcttttggacaaacca
aatttcagcacggtgctttgtcagtcactaagaagcgcagctattaatgatgaattccta
gaggatttgtctaacatgttacatttatctctgtctgaaaaaattggcattggtcttgct
ctgtctgagtctgagatcattgaaaccagaatgagtgcaaagaaattttgcatggctcag
attgaggaattgtgtgcgaatccagtttcagtgaattctgtggagcaaattcagaatatt
gttatgttccttcagcggtctgaaggcctttccaagcatgtagaccgccttttgcagata
ttgtccttattgcaacctcaagagcccttttcatttgttttaagtccactgctttcagat
gaaatgcgcgaggccaatttcttgaggaattgggatcagtaccatgaatgtgaggaaaat
gaattttatgcacttttagctgaaatggaggaggagatgagcgcaggtgatatcgtgaag
gaattgggctatggatgcacatttgatgcctcacactgcagagagattttgtctcaattc
ttgccactgactgagactactatctcgaagatacttggaactattgcacgcagccatgct
agcctcgaagacaaccaaagcacattttcaaactttggtatagcacttggatgcagcatt
tcctctgatctcccacttttaagctcctgggatattgacattcttgtgatgactattaag
caactagctcctggtaccaactggatacaagtgatagaaaatatggatcatgaaggattt
tacatccctaatgaggaagcattctctttcttcatgtctgtatatagacatgcttgccag
gatcctttccctctccatgctatttgtggatccctgtggaagaatactcagggtcagcta
tctcttctcaaatatgctgtattggccccaccagaagtgtttacctttgctcattctgga
agactgctggtctatcatgacgcagtacatggtcataagcttcaacttggacatgcaaat
catgcatggttgtgtcttgatcttttggatgtgctctgccaaatagctgagatgggtcat
tctagttctattcaatcaatgcttgaatatcctctgaagaactgtccagaagtcttactt
cttgggatgtcacatatcaatactgcttataaccttctccaatatgaagtgtcctttatg
gtttttcctatgataatcaaaagcggcacaggaagtggtatgattcattatctctggcac
ataaatcccagtcttgttgtgcggggatttgtagatgcttacaacatcgaaccagacctc
atgaccaagatattggacatatgccgagagctaaagattctgtcatcagtgctagacatg
attccttctccttcaggcatcagattggcagccctagcttcacgaaaagaacttgttgac
cttgagaagtggctgactactaatttaattacatacaaggattttttctttgaggaatgt
ctcaagtttttgaaagaggtccaacttggcggatcacaggatttttctgctaaacctttc
tatcatactagttctacaacaaatatttatatggagactagttctacctttctgaaggtc
cttaaagcccatacaagcttaattgtctccagtagactttctgaggaaatggaacggtta
aatctaacaattatgggctctaatcctcagctgcaaaatggtggctctgcagattcatct
acccctgatgggtttccagatgatgttgaggcagaagcaaactcttacttccatcaaatg
ttttctagtcagttgacaattgatgcgatggttcaaatgctttctcgattcaaggaatcg
cctgtgagaagggagcagttaatttttgaatgtatgattggcaatctatttgaggagtat
agattcttcccaaagtgtcctgaaagacaactaaaaattgcagctgttctatttggttct
gttatcaagcaccagctcgtaactcatctgacactggggattgccttgcgtggtgtttta
gatgcactaagaaaacccccagattccaaaatgtttgtgtttggaaccaaggctttggag
cagtttgtggatcgcctgattgagtggccacagtattgtaaccatatcttgcagatatct
catttgcgtggcactcattcagagcttgtttctttcattgaacgggcgcttgccaggatt
tcatcaggtcatttggaatccgatggaagtaacaatgcttctgctgcttatcatcatggt
ttatctcaggctagcttagggaatggagagttgaatagtgttaacaccacacagcctatg
cagcaactttcctctgcacttcatgttcaacagagacatgaaagtcctcttgatgatcgt
cataaagttgctgtggcttcatctaatgacaccaaatctcttttatctgctggagggcaa
tcttcggttgctcctttaggtgataattcgagtactcagaagagtgtggtcagtactcct
gctatgctgtcttcttctcatggtttccatcgtccttctcgaggagctacctctgctagg
tttggctctgctttgaacattgaaacacttgtagctgctgctgagagaagggaaacaccg
atagagggtccagcatctgagattcaggataaaatatcgttcatcattaacaatatttca
gctgcaaatgttgaagctaaagcaaaagaatttactgaaatattgaaagagcagtactct
ccctggtttgcccagtatatggttatgaaaagggcaagcattgaacccaattttcatgac
ttgtacttgaagtttcttgataaagttaattcgaaggccttacataaggagattgtccag
gccacttatgagaactgcaaggttctcttaggttcagagcttataaaatcaagttcagag
gagcgttcattgctaaaaaatctgggaagctggcttgggaaattaacaattggcaggaat
caagttctaagggctcgtgagatagatcccaaatctttgattattgaggcttatgagaag
gggctgatgattgctgtaattccgtttacttcaaagatcctggagccgtgccaaagtagt
ctagcataccaacctcctaatccttggacaatgagtattcttggattgcttgctgaaatt
tattcaataccaaacttgaaaatgaatcttaagtttgacatagaggttctattcaagaac
cttggtgtagatatgaaggacatagcacccacttctcttctgaaggatcggaaaagagaa
attgaagggaaccctgatttctctaataaagatgctggagcatcccaaccacagattgtt
gctgaagtcaagtctgggataatctctccactaagtcatgctgagttaccacttgaggtt
gccaatccacctaattctggtggccatacacatttgttatctcagtatgctgcttctgtt
catcttccttctgggactttgatggagatgtcaattgagattttatgttttactgacnnt
ttccagttatcatgtgatatgcagcttcccactgccatacctaccattggaactcatgtt
atcatcaacccaaagctcaattcttggggcttgcacttgcattttcaaagggtggttcct
atcgtaatggatagggcaatcaaagaaatagtgtctggcatcgttcaacatagtgtttct
atagctacacagacaacaaaggaacttgttttgaaggattatgccatggaatccgacgag
acacgaatatataatgcagcacacttgatggttgcaagtctggctggaagcttagctcat
gtgacatgcaaggagccattgcgtacttcgatttcaactcaactaaggaactcacttcaa
ggtttgagtattgcaagtgaacttctggaacatgctgtgcaacttgctacaaatgataac
cttgatcttggatgtgcaataattgagcaggctgctacagataaggcaatacaaaccatt
gatggggaaatagctcaacaactttctttaagaaggaagcatcgggatagtgttggttca
acattttttgatgccaacatgtatacccaaggttctatgggtgttctacctgaggcgctc
tgccctaaacctggtcacctttctgtctctcaacagcgagtttatgaggactttgttcgg
cttccatggcaaaaccaatctagccagagctcacattctattcctacaggcttatcgtct
tcttctggtgctactggtctggctagtgcatttggttcaggtttggaacaacttaatgca
ggctacttatctactccaggcaatataggatttgaagcagcctctcggacattggatata
tcttctgatgctattgaatctaattcagctgcagttcttagttcttcatctatccatatt
ggggcaactgatggcgttacccagcagaattctgaaaacaattctgtcattgcttcattt
ccttcaactgctccagcccctgaacttcagccaggggattcctctgatgctgtgaaggaa
ttgacttcacaacaaatatcttcatcagctgcttctgagaaacttgggagtggcatttca
gaaccttcattaaatacaagtgatgcattggataaatatcagattgtcgcacaaaagttg
gaggctttggttaatagtgacgctagagaagcagaaatccagggactaattgtggaggtt
cctgaaatcatacttagatgtatcagtcgagacgaggctgccttagctgtggcacaaaag
gtgtgctttcatttgccagtttgtataagtnntcatgttaatgcttgtcttgcaattctg
gctgctattcgtgacgtttgcaagcttgtggttaaagaactcactagctgggtgatttac
tcagacgaggagcgaaagttcaacaaagatattactgttggccttatatgcagtgaattg
ctcaatcttgcagagtacaatgtgcatatggcgaagcttattgatgggggaagaaataag
agtgcaactgagtttgctatttctcttatccaagcactagttattgaagaatcaaaagtt
atttccgaactccacaatcttgttgatgcattggctaagcttgctacaaaacctggatct
cttgagtcattacaacaattgattacgactgtacggaatcctcttgctaattctgctgtg
ctgtctggttttactgtgggaaaagaggataagactagacaatatagagataaaaaggct
gtgaatgagcctattgctaacagggaagactatagcaatgctgaatctgtggaaccagat
cctgctgatttgcgtgagaaggtttccatgctgtttgcggaatggtaccggatttgcgaa
cttccaggtgcaaatgatgctgcttgtactcattttatcttacaattgcatcaaaatgga
ctattgaagggggatgacatgacagatcactttttccaaattcttacggaagtctctgtt
gcacattgcttatcttctgaggtgattaattctagtgccctgcaatcaactcagcaaggg
cagaatttgtccttcctagccattgatatatattcaaaacttgttttttcaatcctaaag
gtggagcagggatcaagtagattctttctgttgtcaaagattttggctgttactgtgaga
tttatacaaaaagattcagaagagaagaaaacatcttttaacccaagaccatatttccga
ctgtttgtgaactggctattggaccttgtctcctcagatcctgttattgatggtgcaaac
tttcggatcttgacagcttttgctggtgcattccataatttgcagccccttaaagttcct
ttgttcagctttgcgtggcttgagatggtgagtcacaggagctttatgccaaaattgctc
actggaaatgctcagaaggggtggccctatgtccaacgcttgctagtagatttgttccag
ttcctggagccatttttgaggagtgctgaactaggaattcctgttcactttctgtataaa
ggtacactaagggtgctgctggttctgcttcatgatttcccagaattcctgtgtgattat
catttcaccttctgtgatgtgattcctccaagctgcatacaaatgcggaatattatactc
agtgcattcccccgcaatatgaggctgccggatccatctactcccaacttgaagattgat
ttgcttccagaaataagggaggttcctcacattctttctgaggttgatacagctcttaaa
gaaaagcaaatgaaagctgacgtggatgagtatctcaagacgagacagcagggttcttca
ttccttactgaattgaagcagagactactactttcaacaagtgaagctgcctctgctggt
actcgatacaatgtgccattgatcaactcccttgtgctttatgctggaatgcaggccatc
cagcagctgcaagcaagaacacctcatgcacagtcactaggaaacactacttctctagct
gtcttattggtggatgctgctttggatatttaccagacacttatgctggaactggacact
gaaggaagatacctctttctgaatgctgtttccaaccaacttcgctatcctaacaaccat
acgcattacttctcgtttgtcctacttcatttatttgcagaatcaaaccagggaattatt
caggagcagatcacaagagtccttttggaacgcttaatcgttaatcgaccacatccatgg
ggccttctgattactttcattgaactcatcaagaatcctaggtacaacttctggaataga
tccttcataagatgtgcacctgagattgaaaagctctttgaatcagtggcaagatcatgt
ggtggcttaaagcctatggatgagagtatggtctcaggctgggtgtctgagggcgcacac
tga
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integrated database retrieval system
