Hevea brasiliensis (rubber tree): 110669203
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Entry
110669203 CDS
T05150
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110669203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110669203
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110669203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_14
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_15
TPR_7
NatA_aux_su
BTAD
Motif
Other DBs
NCBI-GeneID:
110669203
NCBI-ProteinID:
XP_021686413
LinkDB
All DBs
Position
Unknown
AA seq
1188 aa
AA seq
DB search
MAPFFQEEEEEEEFRVQLKHLEESAEANPEDPSLRFNLGLLLWEKGGQSKEIKDKAAEHF
VISAKLNPHNAASFAYLGHYYSRLSADSQRALKCYQRAITLNPDDSESGESLCDLLDHSG
KETLEQAVCEEASEKSPRAFWAFRRLGYLHVHHCRWSEAVRNLQHAIRGYPTCADLWEAL
GLAYQRLGMFTAATKSYGRAIELDDTRVFALVESGNIFLMLGSFRKGVEQFLQALKFSPQ
NVSAKYGLASGLLGLSKECMNLGAFKWGASLLEDAGEVAEVNAQLAPNVSCIWKLHGDIQ
LTHAKCFPWTERDHGAEFDADTFESSIFSWKQTCYLAAMSAKRSYQRALHLAPWRANLYI
DIAITLDLISSMNENYGHDLYPWQLSEKMACGGLLLEGDNYEFWVALGCLSGHNAMRQHA
LIRGLQLDVSSAFAWSYLGKLYREEGEKKLARQAFDCARSVDPSLALPWAGMAADAHARE
PTTDEAFESCLRAVQILPLAEFQIGLAKLALLSGHLASSQVFGAIQQAVLRAPHYPESHN
LKGLVCEARSEYQTAVASYRLARCAANVSSGNASKSHLRDIAVNLARSLCRAGYAADAVQ
ECENLKKEGVLDAEGMQIYALSLWQLGKSDLALSVARDLAASFNSMEQTSAAASVSFFCR
LLYYISGLDSAITSILKMPKELFENSKISFILSTIHALDQSNRLESVVSSSRYSIVSHED
IIGMHYLIALGKLIKHGSDSCLGFQNGVSYLKKILHNYPNSKLMRNLLSQLLLFTEEWEH
AHVASRCCIVDAPYSGNKLGLKSGCEILGAGAVACYTIGNKDPKFSFPTCGYQCMNGPAA
IRELQKYLRREPWNHNAQYLLILNILQKAREERFPRQLCVILKRLLLVALYNELYTRESL
SYQYQKFQLLLCLSEISLQCGNPINCIEHAKSAVSLCLPDNYRFFGHLLLCRAYAVEGNF
VGLQEEYIRCLEVRTDYHIGWICLKIMESHYSIQTDSNISEQSFMQCSKKQKNSWNMWMA
VFNLVLGLESMWNRDLLSAEEYLSQACLLASADSCLFLCHGAICMELARKFSSSQLLSFA
IRSLTKASVNSVIPLPIISLLRAQAEGSLGSKQRWEENLRLEWYSWPPEMRPAELFFQMH
LLASQSEARVDSSSNVEFCQSPQKWVLRSIHTNPSCLRYWKGLQKLME
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctttttttcaggaggaggaagaagaagaagaatttagagttcagttgaagcac
ttagaggagtctgcagaagccaatcctgaagacccctctcttcgtttcaatctcgggctt
ctcttatgggaaaaaggaggtcaatccaaggaaatcaaggacaaagcggccgaacatttt
gttatttctgccaaactgaatccccataacgctgcctctttcgcatatttgggccattat
tactctcgcttatccgctgattctcagagggctctcaaatgttaccagagggccatcacc
cttaaccctgatgattctgagtctggggaatccctctgtgatctgttggaccattctgga
aaggagaccttggagcaggcagtctgtgaggaagcctcagaaaagtcacccagggctttt
tgggctttccgtagattgggttacctccacgtccatcactgcaggtggtctgaagccgtt
cggaaccttcaacacgctattcgaggttatcccacctgtgctgatttatgggaagctcta
ggtcttgcctaccagcgacttggcatgtttactgctgctactaagtcctatgggcgtgcc
attgaattggatgatacaagagtttttgctttggttgaaagtggaaatatcttcttgatg
ctcggttccttcagaaagggagttgagcagtttctgcaagctctaaaattttcacctcaa
aatgtgtctgcaaagtatggactagcttctggtctccttggtttgtcaaaggaatgtatg
aatttgggtgcattcaaatggggagcatcattgttagaggatgcaggggaagttgcagaa
gtaaatgctcagttggctccaaatgtttcatgtatctggaagttgcatggtgacattcag
ctcacccatgcaaaatgtttcccctggacagaaagggaccacggtgcagaatttgatgca
gacacctttgagtcttccatcttttcttggaagcaaacctgctatttggctgctatgtct
gccaaaaggtcttatcaacgggctttgcacttggccccatggcgagctaacctttatatt
gacattgcgataactttggatctcatttcttctatgaatgaaaattatgggcatgacttg
tatccttggcagctatcggagaagatggcttgtgggggcttgttacttgagggtgacaat
tatgagttctgggtggcactagggtgtttatctggacataatgcaatgagacaacatgcc
ttgatcaggggattgcaattggatgtatcatcagcttttgcttggtcatatcttgggaag
ctttatagagaagaaggtgagaaaaaattggcaagacaggcatttgattgtgctagaagt
gtagatccttcacttgcattaccatgggcaggaatggcagccgatgctcatgctagggaa
cctacaacagatgaggcttttgagagctgtttacgagctgtgcagatattgcctcttgca
gagttccaaataggtcttgctaagcttgctttgctttcagggcaccttgcatcttcacag
gtatttggagccatccagcaggcagtcctgcgtgcccctcactatcctgaatctcataat
ttgaaagggctagtttgtgaggcacgatctgagtatcaaactgctgttgcttcgtatagg
ttagcacgctgtgcagccaatgtttcatcaggcaatgcttctaaatctcatctccgagat
atagcagttaacttggcccgatctctttgtagggccgggtatgctgcagatgctgttcaa
gaatgtgaaaatctgaagaaagaaggtgtacttgatgcggaaggcatgcagatatatgct
ttatcactatggcaacttggtaagagtgatcttgccctctctgtggcaagagatctggct
gccagtttcaattcaatggagcaaacatctgcagctgcttctgttagtttcttctgcaga
ttgctttattacatttctggactagattcagcaattactagcattttgaaaatgccaaaa
gaactgttcgagaactcaaaaatcagctttatactgtctactatacatgctcttgatcag
agtaatcgacttgagtcagttgtttcaagcagtcgttactccattgtatctcatgaagat
atcattggaatgcattatttaatagcacttggtaaattgataaagcatggatcagattct
tgccttggatttcagaatggagtctcttacctaaaaaaaattcttcacaattaccctaac
agtaaattgatgaggaacttgcttagtcagcttttactattcactgaggaatgggaacac
gctcatgtagcaagtaggtgctgcattgtagatgctccatacagtggcaataaactaggt
ttaaagtcaggatgtgagatccttggtgctggtgcagttgcttgctatacaattggcaat
aaagatccgaagttttctttcccaacatgtggctatcagtgtatgaatggacctgcagcc
attcgagaactccagaagtacttgcgtcgagaaccatggaaccataatgcacaatatttg
cttatacttaatattttacagaaggcacgtgaagagagatttcctcggcaactttgtgtg
atactcaagcgactacttttagtggcactttacaatgagctatacactagagagagcttg
tcatatcaatatcagaagtttcagcttctactttgtttatctgaaattagtttgcaatgc
ggaaatccaatcaactgtattgagcatgctaaaagtgctgtgtcactttgtctccctgat
aactaccgtttttttggacacttgttgttatgtcgagcctatgctgttgaaggcaacttt
gtaggccttcaggaagagtatataagatgcctggaggttaggacagattaccatatagga
tggatatgtcttaaaatcatggaatcccattacagcattcaaactgattcaaatatctca
gagcagagtttcatgcaatgctcaaaaaaacagaagaattcatggaatatgtggatggct
gtatttaatttggttttgggtttagaatctatgtggaatcgggatcttttatctgctgaa
gaatatctttcacaagcgtgtttgctggcgagtgctgacagctgtctttttctctgtcat
ggtgctatctgtatggagcttgccagaaagtttagtagttcccaactcttatcatttgct
attaggagtctcaccaaagcttctgtaaattctgttattccgttgcctattatatcgtta
ttgagggcacaagcagaagggagccttggctctaagcagagatgggaggagaacctccgg
cttgaatggtattcttggccaccagaaatgagacctgcagaattgttctttcaaatgcat
ttacttgcaagtcaatcagaagctcgagttgattcttcatccaatgtagaattctgtcaa
agcccacagaaatgggttcttcggtctattcatacaaatccatcttgtttgagatattgg
aagggtttacagaagcttatggaatga
DBGET
integrated database retrieval system
