Humisphaera borealis: IPV69_23910
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Entry
IPV69_23910 CDS
T07075
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hbs
Humisphaera borealis
Pathway
hbs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPV69_23910 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbs03021
]
IPV69_23910 (rpoB)
03400 DNA repair and recombination proteins [BR:
hbs03400
]
IPV69_23910 (rpoB)
Enzymes [BR:
hbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPV69_23910 (rpoB)
Transcription machinery [BR:
hbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPV69_23910 (rpoB)
DNA repair and recombination proteins [BR:
hbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPV69_23910 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QOV89221
UniProt:
A0A7M2WWK9
LinkDB
All DBs
Position
6348894..6352703
Genome browser
AA seq
1269 aa
AA seq
DB search
MRIEQEVRTPRDYSKRGDALPIPDLVRVQRESYVRFLQKEVAADKRKNEGLEALLREVFP
IESYDGNLRLEYVSFDLSEARYTMDECRALRLTYGMPFRIQVRFVRKDRADVQDESIYLG
EIPIMIGGGEFIINGAERCIVNQLHRSPGVDFLIEVQEGDRPLHGFRIIPERGSWIECSV
TKKDALAIRIDQSSKIPATTFLRALDKKYSTTEAIIKEFYTIESVKIANLLPTHYAASPI
IDGETGEELLRPGQQVGEALAKIQTSGLKNIEVVTKVTDPLVLNTLAEDNSTSHEDALMR
IYARLRPGNPPQLEKANTLFTEKFFDENRYRLGRVGRFRINRKFEQNVAETVMTLRSEDL
VGSLKYMFKLRSGEGYTDDIDHLGNRRLRTIDELAAEELRKGFLKLKRTVQERMSLKDPN
ELGKISELVNSKSISSSIDFFFGRGELSQVVDQTNPLSQLTHERRLSALGPGGLNRKRAG
FEVRDVHISHYGRICPIETPEGTNIGLIASLSIYADLDEYGFLITPYRVVTDGKVNGKHK
MLRADEEMKAILAPPDVVVDKEGSLRKGMVLARVEGDLATVLSKEVQYIDISPRQTVSVS
AALIPFLEHDDANRALMGSNMQRQAVPLLRTDPPVVGTGMERPVAQNSGMVVRAERAGVV
TYVDAMRILIDNADEYELRKFHGLNERTCLNQKPIVKKGQRVKKGQIIADGPAVDQGELA
LGRNVLVAFMTFDGYNFEDAIVISERLVKEDIFTSIHIEEYDVEIRETKLGREEFTRDIP
NVSERALANLDEAGIVQIGTRVGPGDILVGKIAPKSKSELTPEEKLLHAIFGRAGEDVKN
DSLEMPAGEEGVVIGAQRFSRRMHMSEEQKKALKKEIDAYEKEMNKRAIVIFKQMVTEIN
EVTGQIMQDPATKQKVAQSEVVDVVMEQIESVLGNEDKFQAGWIKGTKESKEQAINTFSR
FWPRVVAVLKERDRRMEHMKRGDELPSGVLEMVKIYVATKRALSVGDKMAGRHGNKGVIA
RIVPEENMPFLEDGNPVDILLNPLGVPSRMNVGQILETHLGWAMKVLGQQAVTPVFDGAA
EEEIHKAVEEANKAVRDRRKDRKATHQTLGDRQFDVEMPWGGKIQLYDGRTGEPFEQKTT
VGYLYMLKLHHLVDDKIHARATGPYSLITQQPLGGKARTGGQRFGEMEVWGLEAYGASYV
LQELLTVKSDDVEGRTKIYESMVKGTNTLEAGTPVSFDVLCNEIRGLGLNIQLEKKKGLG
PVEEDKDLM
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatcgagcaagaggtgcgtacgccacgcgactactccaagcgcggcgacgctcta
cccatccctgatctggtccgggttcaacgcgaaagctacgtccgtttcctgcaaaaggaa
gtggccgctgacaagcgaaagaacgaaggactcgaagcccttctccgcgaagtgttcccc
atcgaaagctacgatggcaacctccgcctggagtacgtcagcttcgacctttccgaagcc
cgctacaccatggacgaatgccgcgccctgcggctcacctacggcatgccgttccgcatc
caggtgcgcttcgtccgcaaggaccgggccgacgtccaggacgagtcgatctacctcggc
gaaatcccgatcatgatcggtggcggcgagttcatcatcaacggcgccgagcgctgcatc
gtgaaccagctccaccgctcgccgggtgtcgacttcctgatcgaagtccaggaaggcgat
cgcccgctccacggtttccgcatcatcccggaacgtggaagctggatcgaatgctcggtg
acgaagaaggacgcactggcgatccgcatcgaccagagcagcaagatccccgcgaccacc
ttcctgcgggcgctggacaagaaatacagcaccaccgaagcgatcatcaaggagttctac
acgatcgaatcggtcaagatcgcgaacctcctgccgacgcactacgcggcctcgcccatc
atcgacggcgagaccggcgaagagctgctccgtcccggccagcaggtcggcgaagcgctc
gccaagatccagacctccggcctgaagaacatcgaagtcgtcaccaaggtgaccgacccg
ctcgtcctcaacaccctggccgaagacaactcgaccagccatgaagacgcgctgatgcgc
atctacgcccggctgcgtcccggcaacccgccgcagctcgagaaggccaacacgctcttc
accgaaaagttcttcgacgaaaaccgttaccgcctcggacgcgtcggccgcttccgcatc
aaccggaagttcgagcagaacgtcgctgaaacagtgatgacgctccgctcggaagacctc
gtcggcagcctgaagtacatgttcaagctgcggtcgggcgaagggtacacggacgatatc
gatcacctgggcaaccgccgtctgcgcacgatcgacgaactggccgccgaagaactccgc
aagggcttcctgaaactcaagcgcaccgtccaggagcgcatgagcctgaaggaccccaac
gagctcggcaagatcagcgagctggtcaacagcaagtcgatctcgtcgtcgatcgacttc
ttcttcggccgcggcgaactgtcgcaggtcgtcgaccagaccaacccgctgtcgcagctc
acccacgagcgtcggctgtcggcccttggacctggcggtctgaaccgcaagcgcgccggc
ttcgaagtgcgtgacgtgcacatttcgcactacggccgcatctgcccgatcgagacgccg
gaaggcaccaacatcggtctgatcgcgtcgctgtcgatctatgccgacctcgacgagtac
ggcttcctcatcacgccttaccgcgtggtgaccgacggcaaggtcaacggcaagcacaag
atgctgcgtgccgacgaagagatgaaggcgatcctggccccgccggacgtcgtcgtcgac
aaggaaggcagcctgcgcaaaggcatggtgctcgcccgcgtggaaggcgaccttgcgacc
gtgctcagcaaggaagtgcagtacatcgacatcagcccgcgccagacggtttccgtctcg
gcggcgctgatcccgttcctcgaacacgacgacgccaaccgcgcgttgatgggttcgaac
atgcagcggcaggccgttcccctgctgcggaccgaccccccggtggtcggcaccggcatg
gaacgccccgtggcgcagaacagcggcatggtcgtccgggccgagcgcgccggcgtcgtg
acgtatgtcgatgcgatgcgcatcctgatcgacaatgccgacgaatacgaactccgcaag
ttccacggcctcaatgaacgcacctgcctgaaccagaagcccatcgtcaagaagggccag
cgggtcaagaaggggcagatcatcgctgacggcccggccgtcgatcagggcgaactggcg
ttgggtcgcaacgtgctcgtcgcgttcatgaccttcgacggctacaacttcgaagacgcc
atcgtcatcagcgaacggctcgtgaaggaagacatcttcacctcgattcacatcgaggag
tacgacgtcgaaatccgcgagaccaagctcggccgcgaagagttcacccgcgacatcccc
aacgtgtccgaacgcgcactggccaacctcgacgaggcgggcatcgtgcagatcggcacc
cgcgtcggccccggcgacatcctcgtcggcaagatcgctccgaagtccaagagcgaactg
acccccgaagagaaactgctccacgccatcttcggccgcgccggcgaagacgtgaagaac
gactcgctcgaaatgccggccggtgaggaaggcgtcgtcatcggcgcccagcgcttcagc
cgtcgcatgcacatgagcgaagagcagaagaaggcgctcaagaaggaaatcgacgcctac
gaaaaggagatgaacaagcgggcgatcgtcatcttcaagcagatggtgacggagatcaac
gaagtgaccgggcagatcatgcaggacccggccaccaagcagaaggtcgcccagagcgaa
gtcgttgacgtcgtcatggaacagatcgaatcggtcctcggcaacgaggacaagttccag
gccggctggatcaagggcaccaaggagtccaaggagcaggcgatcaacaccttctcccgc
ttctggccacgcgtcgtcgcggttcttaaagaacgcgaccgccgcatggagcacatgaag
cgcggcgacgagctgccgtcgggcgtgctcgaaatggtcaagatctacgtcgcgaccaag
cgcgccctgagcgtcggcgacaagatggccggccgtcacggtaacaagggtgttatcgcc
cgcatcgtgccggaagagaacatgccgttcctagaagacggcaatccggtcgacatcctg
ctcaacccgctgggcgtgcccagccgtatgaacgtcgggcagatcctggaaacccacctg
ggctgggccatgaaggtcctcggccagcaggcggtcacgccggtcttcgacggcgccgcc
gaagaagagatccacaaggcggtcgaagaggccaacaaggccgtccgcgatcgccgcaag
gatcgcaaggcgacgcaccagacgctcggcgatcgtcagttcgacgtggagatgccgtgg
ggcggaaagattcagctctacgacggccgcaccggcgagccgttcgagcagaagacgacc
gtcggctatctgtacatgctgaagctgcatcacctggtcgacgacaagatccacgcccgc
gcgacgggcccgtactcgctgatcacgcagcagcccctcggcggcaaggcccgcaccggc
ggccagcggttcggtgagatggaagtgtggggtctggaagcttatggcgcgtcctacgtc
cttcaggaactcctgacggtcaagtcggacgacgtcgaaggccggactaagatttacgag
tcgatggtcaagggcaccaacacgctcgaagccggcacgccggtttcgttcgacgtgctc
tgtaacgaaatccgcggtctcgggttgaacattcagctcgagaagaagaagggccttgga
cctgtagaagaggacaaggacctgatgtga
DBGET
integrated database retrieval system
