Helicobacter pylori PeCan18: HPPC18_02945
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Entry
HPPC18_02945 CDS
T02036
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hca
Helicobacter pylori PeCan18
Pathway
hca03030
DNA replication
hca03410
Base excision repair
hca03420
Nucleotide excision repair
hca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPPC18_02945 (ligA)
03410 Base excision repair
HPPC18_02945 (ligA)
03420 Nucleotide excision repair
HPPC18_02945 (ligA)
03430 Mismatch repair
HPPC18_02945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hca03032
]
HPPC18_02945 (ligA)
03400 DNA repair and recombination proteins [BR:
hca03400
]
HPPC18_02945 (ligA)
Enzymes [BR:
hca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPPC18_02945 (ligA)
DNA replication proteins [BR:
hca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPPC18_02945 (ligA)
DNA repair and recombination proteins [BR:
hca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPPC18_02945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPPC18_02945 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPPC18_02945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPPC18_02945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
HHH_5
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AFI02362
UniProt:
I0EHE3
LinkDB
All DBs
Position
complement(618701..620671)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPTQ
KVGATATNEFSKNPHLMRMWSLDDVFNQSELQAWLQRILKVYPNASFVCSPKLDGVSLNL
LYQHGKLISATTRGNGLEGELVTNNAKHIANIPHSIAYNGEIEIRGEVIIAKTDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEENYHTLIRERESFFALLDGMVIVVDELDIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIEKKN
IMLNDRVVIIRSGDVIPKIIKPLESYRDGSQQKIMCPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIVNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFELLNPKNSDTAEEKQKSSSVFSNKTIVLTGTLSKPRQEY
AQMLENLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGVNILNEEELLKCLKELD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaatcttgatgaacccatcgtaagcgatgcggtctatgatgaactttatcaa
gaattaaaagcttatgaagaagaaaaccctaatcgcattcaggctaactcccctacccaa
aaagtgggggctactgccaccaatgagttcagtaaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaagtgaattgcaagcgtggttgcaacgcattttaaaa
gtttatcctaacgcttcattcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctaataagcgcgaccactaggggtaatggcttagaaggggag
cttgttaccaacaacgctaaacacatcgctaatatcccccattctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcattgctaaaaccgattttgacgccttgaataaa
gagcgcctaaacgctaacgaacccctattcgctaaccctagaaacgccgcatcagggagt
ttgaggcagcttgatagcgaaattactaaaaagcgcaaattgcaattcatcccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtctcg
ctgggttttagcgccattcaatacttaagcttaaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattagagaaagggagagtttttttgcccttttagacggcatggtg
atcgttgtggatgaattggatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacaccaaaattgtaggagtcatc
aaccaagtggggcgcagcggggcaatcacaccggtcgctctcttagagcctgtggaaatt
gctggggctatggttaatagagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcaacgatagggtggtaatcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagagacggctcgcaacaaaaaatcatgtgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgccaaaaccttaat
tgcccagcaaggttgaaagaaagcttgattcatttcgcttctaaggatgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaagctcattgttaacgcc
ttggatctgtatgctttaaaattggaagatttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattagacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatatcggtaagggagcgagtaaaacgctagccaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttggaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgagttgttaaaccctaaaaatagcgatacggctgaagaaaagcaaaaaagctcttct
gttttcagcaataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaattgcttcaagcgtgagcgctaaaaccgat
tttttaatcgctggagaaaacgccggctcaaaactcgctctggcgcaaaaacatggcgtg
aacattttgaatgaagaagaattgttaaagtgccttaaggaattggattaa
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